Variant report

Variant	esv3331633
Chromosome Location	chr1:57571808-57572171
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57571164..57573212-chr1:57625317..57627807,2	MCF-7	breast:
2	chr1:57571162..57573727-chr1:57574083..57575763,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571894657	chr1:57571809-57571810	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs111345571	chr1:57571821-57571822	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs191503534	chr1:57571826-57571827	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs150180363	chr1:57571868-57571869	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs564287424	chr1:57571912-57571913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs77459610	chr1:57571922-57571923	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs367564454	chr1:57571928-57571929	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs201532009	chr1:57571930-57571931	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs68128260	chr1:57571931-57571932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs371571942	chr1:57571932-57571933	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs183305317	chr1:57571933-57571934	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs542920139	chr1:57571937-57571938	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs10658621	chr1:57571939-57571940	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs568971940	chr1:57571940-57571941	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188602996	chr1:57571973-57571974	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs561503	chr1:57571980-57571981	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs74987737	chr1:57572033-57572034	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs534491308	chr1:57572046-57572047	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs554195915	chr1:57572111-57572112	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs473562	chr1:57572121-57572122	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs573123510	chr1:57572146-57572147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Papillary thyroid carcinoma	21436994	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Meckel-Gruber syndrome	21572526	CNVD
Breast cancer	16620391	CNVD
Multiple myeloma	16616336	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Developmental delay	19490664	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57551400-57622000	Weak transcription	Fetal Intestine Small	intestine
2	chr1:57567400-57576800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:57569200-57574200	Weak transcription	Right Atrium	heart
4	chr1:57569400-57573600	Weak transcription	Ovary	ovary
5	chr1:57569400-57574400	Weak transcription	Left Ventricle	heart
6	chr1:57570400-57572000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:57570400-57572200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:57570600-57572200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:57570600-57572800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:57570800-57574200	Weak transcription	Fetal Heart	heart
11	chr1:57571200-57572400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:57571600-57575600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:57571600-57577600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:57571800-57575600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:57571800-57577000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:57572000-57576800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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