Variant report

Variant	esv3331635
Chromosome Location	chr10:42399888-42408350
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42406916-42406946	NONHSAT012847
2	lnc-CCNYL2-11	chr10:42406659-42406684	NONHSAT012850
3	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847
4	lnc-CCNYL2-11	chr10:42407539-42407748	NONHSAT012850

Extended variants
information (count: 2008 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:2008 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113063298	chr10:42399889-42399890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs529768583	chr10:42399906-42399907	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs371242376	chr10:42399907-42399908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs376706557	chr10:42399908-42399909	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs375391970	chr10:42399909-42399910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs369415764	chr10:42399910-42399911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs371245033	chr10:42399911-42399912	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373885772	chr10:42399914-42399915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs549609152	chr10:42399918-42399919	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs61847651	chr10:42399920-42399921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs371505118	chr10:42399922-42399923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375785279	chr10:42399926-42399927	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2204161	chr10:42399928-42399929	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs61847653	chr10:42399936-42399937	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs61847654	chr10:42399941-42399942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs369990249	chr10:42399942-42399943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374323606	chr10:42399943-42399944	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377652308	chr10:42399947-42399948	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538561203	chr10:42399951-42399952	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs369748965	chr10:42399953-42399954	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373613790	chr10:42399956-42399957	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376599304	chr10:42399957-42399958	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552030939	chr10:42399968-42399969	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370674462	chr10:42399970-42399971	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs372668953	chr10:42399974-42399975	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375617470	chr10:42399978-42399979	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs371052418	chr10:42399981-42399982	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs111915707	chr10:42399987-42399988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs61847655	chr10:42399990-42399991	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs55981131	chr10:42399994-42399995	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs374439556	chr10:42399995-42399996	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs368623901	chr10:42400000-42400001	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs61847656	chr10:42400005-42400006	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141820637	chr10:42400009-42400010	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs72493736	chr10:42400012-42400013	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554023389	chr10:42400013-42400014	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs143633792	chr10:42400014-42400015	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs370917814	chr10:42400016-42400017	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs371200415	chr10:42400017-42400018	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573797690	chr10:42400020-42400021	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375104152	chr10:42400021-42400022	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs368141947	chr10:42400026-42400027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs77347170	chr10:42400033-42400034	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs372001262	chr10:42400039-42400040	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs376607854	chr10:42400040-42400041	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs367562103	chr10:42400042-42400043	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs374123138	chr10:42400047-42400048	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs536303869	chr10:42400048-42400049	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61847657	chr10:42400049-42400050	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs555952754	chr10:42400050-42400051	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:453 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
8	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
13	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
16	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
21	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
23	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
24	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
25	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
28	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
30	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
31	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
32	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
33	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
35	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
36	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
39	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
41	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
42	chr10:42373600-42402600	ZNF genes & repeats	Fetal Brain Male	brain
43	chr10:42373600-42402800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:42373600-42402800	ZNF genes & repeats	HepG2	liver
45	chr10:42373600-42403600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr10:42373600-42405200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr10:42373600-42409400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:42373600-42409400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr10:42373600-42409600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr10:42373600-42409800	ZNF genes & repeats	Primary T cells from cord blood	blood

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