Variant report

Variant	esv3331847
Chromosome Location	chr5:9309998-9310384
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:9310267..9312375-chr5:9313108..9315869,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140179020	chr5:9310005-9310006	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs376085818	chr5:9310009-9310010	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs35947037	chr5:9310010-9310011	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs6148905	chr5:9310036-9310037	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs555860620	chr5:9310037-9310038	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs576945859	chr5:9310040-9310041	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs529961326	chr5:9310041-9310042	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs182817651	chr5:9310049-9310050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553124610	chr5:9310050-9310051	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs548339071	chr5:9310090-9310091	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs147417612	chr5:9310097-9310098	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569731734	chr5:9310109-9310110	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186825438	chr5:9310132-9310133	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs36100516	chr5:9310170-9310171	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373645983	chr5:9310172-9310173	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575281518	chr5:9310194-9310195	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564440147	chr5:9310200-9310201	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs192313919	chr5:9310205-9310206	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1018956	chr5:9310216-9310217	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs535408613	chr5:9310222-9310223	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs533067023	chr5:9310246-9310247	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs184745487	chr5:9310300-9310301	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs559891816	chr5:9310322-9310323	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs75240733	chr5:9310343-9310344	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs75642043	chr5:9310344-9310345	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs74523089	chr5:9310346-9310347	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs4235595	chr5:9310350-9310351	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs571818724	chr5:9310355-9310356	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs73742634	chr5:9310382-9310383	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Cervical squamous cell carcinoma	21590768	CNVD
abnormal development	18461090	CNVD
Lung cancer	19547694	CNVD
Cri-du chat syndrome	22283845	CNVD
Disorders of sex development	21048976	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Cancer	16751803	CNVD
Breast cancer	17133270	CNVD
Hepatocellular carcinoma	22174799	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Salivary gland tumor	18059337	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Kartagener syndrome	16639409	CNVD
Medulloblastoma	21979893	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Multiple myeloma	17550852	CNVD
Developmental delay	21147756	CNVD
prenatal diagnosis	22389664	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Breast cancer	21858162	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Melanoma	22183965	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Urothelial carcinoma	21177765	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Ovarian cancer	19193619	CNVD
Hepatocellular carcinoma	16785998	CNVD
Cancer	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intellectual disability	22102821	CNVD
Myelofibrosis	22110671	CNVD
Cri-du chat syndrome	16773131	CNVD
Cryptorchidism	21048976	CNVD
Glioblastoma multiforme	22286061	CNVD
Cervical cancer	16585170	CNVD
Mental retardation	16773131	CNVD
Non-small cell lung cancer	21829676	CNVD
Cri-du chat syndrome	22470819	CNVD
sporadic birth defects	19047251	CNVD
Lung adenocarcinoma	17982442	CNVD
Intellectual disability	21811512	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:9279400-9313800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:9279800-9332000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:9283600-9332200	Weak transcription	Esophagus	oesophagus
4	chr5:9285600-9316400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:9285800-9318200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:9286000-9312400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:9286000-9324600	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:9286000-9332200	Weak transcription	NHLF	lung
9	chr5:9292200-9332200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:9297800-9334600	Weak transcription	Left Ventricle	heart
11	chr5:9298200-9332200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:9299800-9332400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:9300000-9335400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:9301800-9318200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:9301800-9332400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:9302000-9335600	Weak transcription	Liver	Liver
17	chr5:9302200-9318200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:9305000-9312800	Weak transcription	Aorta	Aorta
19	chr5:9305800-9314600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:9306200-9332000	Weak transcription	Fetal Stomach	stomach
21	chr5:9307000-9321000	Weak transcription	Fetal Heart	heart
22	chr5:9307400-9332200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:9308000-9312600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:9308200-9310400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:9308600-9317200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:9308600-9320000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr5:9308600-9320600	Weak transcription	Pancreas	Pancrea
28	chr5:9308600-9332200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:9308800-9346600	Weak transcription	Ovary	ovary
30	chr5:9309800-9312600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:9309800-9313800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:9309800-9324600	Weak transcription	NHDF-Ad	bronchial

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