Variant report

Variant	esv3331925
Chromosome Location	chr11:51573120-51576335
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4C46-2	chr11:51575662-51575709	NONHSAT021350
2	lnc-OR4C46-2	chr11:51573408-51573440	NONHSAT021350

Extended variants
information (count: 691 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:691 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149020679	chr11:51573120-51573121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs61890616	chr11:51573124-51573125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113876649	chr11:51573131-51573132	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs55778270	chr11:51573133-51573134	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs532808229	chr11:51573138-51573139	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs61890617	chr11:51573141-51573142	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs551344064	chr11:51573173-51573174	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs78629219	chr11:51573179-51573180	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201204461	chr11:51573189-51573190	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111970324	chr11:51573195-51573196	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs138106376	chr11:51573202-51573203	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs202209909	chr11:51573203-51573204	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs144671202	chr11:51573205-51573206	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs189560115	chr11:51573209-51573210	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs144043850	chr11:51573216-51573217	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs192414300	chr11:51573217-51573218	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs141482074	chr11:51573222-51573223	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs185332945	chr11:51573226-51573227	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs61890618	chr11:51573231-51573232	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs148334541	chr11:51573233-51573234	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs150594293	chr11:51573238-51573239	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs190164532	chr11:51573239-51573240	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs143068223	chr11:51573240-51573241	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs148650753	chr11:51573244-51573245	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs181784050	chr11:51573246-51573247	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs566475542	chr11:51573248-51573249	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs78586291	chr11:51573255-51573256	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs533911398	chr11:51573256-51573257	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs75323547	chr11:51573263-51573264	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs57815555	chr11:51573264-51573265	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs142260864	chr11:51573276-51573277	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs138214427	chr11:51573277-51573278	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs150889250	chr11:51573279-51573280	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs78578509	chr11:51573284-51573285	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs145498083	chr11:51573295-51573296	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs140247326	chr11:51573296-51573297	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs138810430	chr11:51573299-51573300	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs567480226	chr11:51573305-51573306	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs148146032	chr11:51573306-51573307	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs149745451	chr11:51573312-51573313	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs141321430	chr11:51573319-51573320	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs138347414	chr11:51573321-51573322	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs571858153	chr11:51573323-51573324	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs149956300	chr11:51573329-51573330	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs143718994	chr11:51573333-51573334	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs113116570	chr11:51573342-51573343	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs75403006	chr11:51573349-51573350	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs61890619	chr11:51573358-51573359	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs556544981	chr11:51573367-51573368	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs188454335	chr11:51573381-51573382	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
small cell lung cancer	20016488	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:245 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51567200-51573600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr11:51567200-51573600	ZNF genes & repeats	Liver	Liver
3	chr11:51567200-51573800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr11:51567200-51575800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:51567200-51576400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:51567200-51576600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr11:51567200-51581200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr11:51567200-51581200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:51567200-51581200	ZNF genes & repeats	Primary T cells from cord blood	blood
10	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr11:51567200-51581200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr11:51567200-51581400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:51567200-51583200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr11:51567200-51584000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:51567200-51584000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr11:51567200-51584200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr11:51567200-51584400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr11:51569000-51573600	ZNF genes & repeats	Fetal Stomach	stomach
19	chr11:51570200-51573200	Weak transcription	NHEK	skin
20	chr11:51571800-51573600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:51571800-51573600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:51571800-51573600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:51571800-51573600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr11:51571800-51573600	ZNF genes & repeats	Brain Anterior Caudate	brain
25	chr11:51571800-51573600	ZNF genes & repeats	Fetal Heart	heart
26	chr11:51571800-51573600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr11:51571800-51573600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
28	chr11:51571800-51573600	ZNF genes & repeats	HepG2	liver
29	chr11:51571800-51573600	ZNF genes & repeats	NH-A	brain
30	chr11:51571800-51573800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
31	chr11:51571800-51573800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:51571800-51573800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:51571800-51573800	ZNF genes & repeats	HMEC	breast
34	chr11:51571800-51575800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr11:51571800-51581200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
36	chr11:51572000-51573400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:51572000-51573400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
38	chr11:51572000-51573600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:51572000-51573600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:51572000-51573600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr11:51572000-51573600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:51572000-51573600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
43	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
45	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
46	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
47	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
48	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:51572000-51573600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
50	chr11:51572000-51573600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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