Variant report
| Variant | esv3332612 |
|---|---|
| Chromosome Location | chr11:15811362-15811810 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs114544003 | chr11:15811392-15811393 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs533750925 | chr11:15811419-15811420 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs558690283 | chr11:15811432-15811433 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs564478239 | chr11:15811446-15811447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs575049025 | chr11:15811460-15811461 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs570579396 | chr11:15811466-15811467 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs144901622 | chr11:15811520-15811521 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs370259475 | chr11:15811521-15811522 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs4032248 | chr11:15811547-15811548 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs537972228 | chr11:15811551-15811552 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs556271480 | chr11:15811553-15811554 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs114742183 | chr11:15811602-15811603 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs542581159 | chr11:15811626-15811627 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs73426958 | chr11:15811636-15811637 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 15 | rs541833768 | chr11:15811638-15811639 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs192703566 | chr11:15811664-15811665 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs533480181 | chr11:15811678-15811679 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs142294563 | chr11:15811686-15811687 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs145914407 | chr11:15811705-15811706 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs566622847 | chr11:15811708-15811709 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs564738511 | chr11:15811727-15811728 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs531768603 | chr11:15811756-15811757 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs182045494 | chr11:15811775-15811776 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs561837774 | chr11:15811795-15811796 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:53)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 16608533 | CNVD |
| Cancer | 21183584 | CNVD |
| Gastric adenocarcinoma | 19115996 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Burkitt''s lymphoma | 19759907 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Parathyroid adenoma | 22454399 | CNVD |
| Chordoma | 21602918 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
| T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Beckwith-Wiedemann syndrome | 21518781 | CNVD |
| Wilms tumour | 21518781 | CNVD |
| Hepatoblastoma | 21518781 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Cancer | 24489367 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Neuroblastoma | 19435921 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Breast cancer | 21858162 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:15810800-15814000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
