Variant report

Variant	esv3332719
Chromosome Location	chr4:128979847-128980200
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:128800672..128803742-chr4:128979765..128985676,12	K562	blood:
2	chr4:128894792..128897559-chr4:128980082..128981594,2	K562	blood:
3	chr4:128978832..128981419-chr4:128985568..128987375,3	MCF-7	breast:
4	chr4:128800019..128803742-chr4:128979765..128984325,9	K562	blood:
5	chr4:128701934..128705815-chr4:128979420..128984468,5	K562	blood:
6	chr4:128701934..128705815-chr4:128979420..128985014,7	K562	blood:
7	chr4:128702147..128704685-chr4:128980177..128982661,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164070	chromatin interactions
ENSG00000142731	chromatin interactions

Extended variants
information (count: 17 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539686377	chr4:128979874-128979875	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs558329099	chr4:128979875-128979876	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs111659114	chr4:128979883-128979884	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs544080571	chr4:128979902-128979903	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs563520067	chr4:128979938-128979939	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs140843324	chr4:128979939-128979940	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs186305040	chr4:128979975-128979976	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs559059993	chr4:128980018-128980019	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs112477107	chr4:128980030-128980031	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs191981568	chr4:128980036-128980037	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs563480257	chr4:128980037-128980038	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs530728732	chr4:128980055-128980056	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs549231225	chr4:128980061-128980062	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs377276626	chr4:128980062-128980063	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs149733543	chr4:128980080-128980081	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs72618834	chr4:128980122-128980123	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs182850947	chr4:128980175-128980176	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Olfactory neuroblastoma	18408657	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myelofibrosis	22110671	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Gastric cancer	16891809	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128887600-128981200	Weak transcription	Psoas Muscle	Psoas
2	chr4:128951400-128981800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:128976200-128981400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:128977000-128981000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:128977000-128981000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:128977000-128981200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:128977000-128981200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:128978000-128981000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:128978200-128981000	Weak transcription	Placenta	Placenta
10	chr4:128979000-128981200	Weak transcription	NHDF-Ad	bronchial
11	chr4:128979200-128981400	Weak transcription	Right Atrium	heart
12	chr4:128979400-128980200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:128980200-128981800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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