Variant report
| Variant | esv3333288 |
|---|---|
| Chromosome Location | chr18:14931890-14932054 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs199985009 | chr18:14931903-14931904 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs539062177 | chr18:14931906-14931907 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs4890738 | chr18:14931922-14931923 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs4890739 | chr18:14931933-14931934 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs181587918 | chr18:14931935-14931936 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs201233004 | chr18:14931938-14931939 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs79842064 | chr18:14931954-14931955 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs62087277 | chr18:14931960-14931961 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs62087278 | chr18:14931973-14931974 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs62087279 | chr18:14931974-14931975 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs62087280 | chr18:14931976-14931977 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs200186395 | chr18:14931982-14931983 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs62087281 | chr18:14932003-14932004 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs59660406 | chr18:14932011-14932012 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs184673131 | chr18:14932022-14932023 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs34138197 | chr18:14932028-14932029 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs561533519 | chr18:14932046-14932047 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:52)
| Disease | PMID | Source |
|---|---|---|
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Seminomas | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 18922857 | CNVD |
| Kartagener syndrome | 16639409 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Cancer | 21183584 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Melanoma | 18172304 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Colorectal cancer | 19150955 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Cancer | 21637783 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Splenic marginal zone lymphoma | 21957467 | CNVD |
| Trisomy 18 syndrome | 17576883 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Barrett''s syndrome | 19417022 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Heart disease | 21282601 | CNVD |
| Glioblastoma multiforme | 21922591 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Acute myeloid leukemia | 17377590 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 16620391 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| Glioma | 17123091 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Cancer | 20164919 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:14920200-14933200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 2 | chr18:14922200-14933000 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 3 | chr18:14931200-14932000 | Enhancers | Fetal Intestine Large | intestine |
| 4 | chr18:14931600-14933200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
