Variant report

Variant	esv3333289
Chromosome Location	chr6:145742434-145744532
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:61 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6925779	chr6:145742554-145742555	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs9497299	chr6:145742620-145742621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534490863	chr6:145742729-145742730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs117356408	chr6:145742793-145742794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543286531	chr6:145742939-145742940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544402211	chr6:145742940-145742941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563589899	chr6:145742941-145742942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs6570680	chr6:145742947-145742948	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs116048779	chr6:145743017-145743018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs200417035	chr6:145743021-145743022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs75200625	chr6:145743026-145743027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188323661	chr6:145743041-145743042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs75497143	chr6:145743082-145743083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560762673	chr6:145743113-145743114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs191890914	chr6:145743130-145743131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs182592397	chr6:145743171-145743172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186968077	chr6:145743184-145743185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs373162416	chr6:145743190-145743191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375123076	chr6:145743191-145743192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376137437	chr6:145743193-145743194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs563104338	chr6:145743194-145743195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs68078471	chr6:145743203-145743204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532256039	chr6:145743208-145743209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369003830	chr6:145743210-145743211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368615331	chr6:145743212-145743213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs33957759	chr6:145743213-145743214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs9484990	chr6:145743214-145743215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs565630474	chr6:145743216-145743217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534514322	chr6:145743218-145743219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs386408849	chr6:145743222-145743223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs61310193	chr6:145743229-145743230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139633886	chr6:145743277-145743278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs191381624	chr6:145743292-145743293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534168291	chr6:145743367-145743368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs151037957	chr6:145743429-145743430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9399546	chr6:145743449-145743450	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs556471796	chr6:145743574-145743575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs369977581	chr6:145743612-145743613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373281721	chr6:145743613-145743614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs199800002	chr6:145743614-145743615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs397764517	chr6:145743624-145743625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs185717189	chr6:145743649-145743650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188578915	chr6:145743741-145743742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553759633	chr6:145743796-145743797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs140962956	chr6:145743809-145743810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570928592	chr6:145743838-145743839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs542532953	chr6:145743951-145743952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs537705075	chr6:145743996-145743997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs150165298	chr6:145744007-145744008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs145662458	chr6:145744009-145744010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145740800-145749600	Weak transcription	Fetal Brain Male	brain

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