Variant report
| Variant | esv3333660 |
|---|---|
| Chromosome Location | chr2:212887414-212887784 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs183778155 | chr2:212887431-212887432 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs189351939 | chr2:212887445-212887446 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs528883451 | chr2:212887460-212887461 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs576023943 | chr2:212887507-212887508 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs80044823 | chr2:212887517-212887518 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs554186707 | chr2:212887522-212887523 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs116669340 | chr2:212887525-212887526 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs572354237 | chr2:212887534-212887535 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs572174686 | chr2:212887675-212887676 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs12694258 | chr2:212887731-212887732 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 11 | rs145427271 | chr2:212887742-212887743 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs542788494 | chr2:212887757-212887758 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:67)
| Disease | PMID | Source |
|---|---|---|
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Ependymoma | 16718352 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 16751803 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Embryonal rhabdomyosarcoma | 16790082 | CNVD |
| Autism | 16446308 | CNVD |
| Autism | 19401682 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Biliary cancer | 20360734 | CNVD |
| Breast cancer | 20360734 | CNVD |
| Coronary artery disease | 20360734 | CNVD |
| Crohn''s disease | 20360734 | CNVD |
| Hypertension | 20360734 | CNVD |
| Rheumatoid arthritis | 20360734 | CNVD |
| Type 1 diabetes | 20360734 | CNVD |
| Type 2 diabetes | 20360734 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Autism | 20808228 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Ovarian cancer | 19193619 | CNVD |
| Non-small cell lung cancer | 18676828 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Chordoma | 18071362 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 18923514 | CNVD |
| Schizophrenia | 22241247 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Developmental delay | 21147756 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Schizophrenia | 20838587 | CNVD |
| Breast cancer | 17661082 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Schizophrenia | 18990708 | CNVD |
| Acute lymphoblastic leukemia | 18458336 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:212882800-212892000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr2:212883800-212892000 | Weak transcription | Osteobl | bone |
| 3 | chr2:212884200-212889800 | Weak transcription | Fetal Heart | heart |
| 4 | chr2:212887200-212892000 | Weak transcription | HUVEC | blood vessel |
| 5 | chr2:212887400-212896600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
