Variant report

Variant	esv3333810
Chromosome Location	chr3:90316662-90326060
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 636 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:636 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369258188	chr3:90316684-90316685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573717927	chr3:90316693-90316694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs542828045	chr3:90316697-90316698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs559310784	chr3:90316699-90316700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140785274	chr3:90316700-90316701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs188660470	chr3:90316701-90316702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs549313602	chr3:90316744-90316745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567539408	chr3:90316745-90316746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs537728075	chr3:90316761-90316762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550620444	chr3:90316795-90316796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs144735590	chr3:90316802-90316803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201797736	chr3:90316845-90316846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536418236	chr3:90316851-90316852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs547150269	chr3:90316895-90316896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs191566391	chr3:90316959-90316960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs539312216	chr3:90316970-90316971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs150767292	chr3:90316987-90316988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs577668362	chr3:90317032-90317033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs183427222	chr3:90317034-90317035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs557062900	chr3:90317036-90317037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs187913404	chr3:90317062-90317063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs542390556	chr3:90317066-90317067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs553122613	chr3:90317077-90317078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571538346	chr3:90317101-90317102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200337843	chr3:90317111-90317112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572999920	chr3:90317126-90317127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs544855974	chr3:90317130-90317131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs139161029	chr3:90317148-90317149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370141965	chr3:90317155-90317156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375636217	chr3:90317158-90317159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs544222998	chr3:90317176-90317177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560976138	chr3:90317199-90317200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530196768	chr3:90317213-90317214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546820725	chr3:90317217-90317218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs567054172	chr3:90317274-90317275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539167600	chr3:90317275-90317276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs553800461	chr3:90317283-90317284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs552866767	chr3:90317289-90317290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs569589811	chr3:90317308-90317309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs191532221	chr3:90317328-90317329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572313202	chr3:90317354-90317355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149956637	chr3:90317360-90317361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536341058	chr3:90317365-90317366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542786688	chr3:90317379-90317380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552796487	chr3:90317381-90317382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143116512	chr3:90317382-90317383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs544819169	chr3:90317395-90317396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558402522	chr3:90317401-90317402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs371107938	chr3:90317404-90317405	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs575175834	chr3:90317406-90317407	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90314000-90317400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:90317400-90318600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:90320400-90322800	ZNF genes & repeats	Liver	Liver
4	chr3:90320600-90323000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr3:90320800-90325600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:90321000-90321200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:90321000-90321200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:90321000-90321200	ZNF genes & repeats	Brain Angular Gyrus	brain
9	chr3:90321000-90321200	ZNF genes & repeats	Fetal Lung	lung
10	chr3:90321000-90324000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr3:90322000-90323800	ZNF genes & repeats	Dnd41	blood
12	chr3:90322200-90322600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:90322200-90322800	ZNF genes & repeats	Brain Anterior Caudate	brain
14	chr3:90322200-90323200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr3:90323600-90324000	ZNF genes & repeats	Psoas Muscle	Psoas
16	chr3:90325800-90326400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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