Variant report

Variant	esv3334269
Chromosome Location	chr10:110700462-110702460
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:110701331-110701531	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-XPNPEP1-2	chr10:110700727-110701068	NONHSAT016311

Variant related genes	Relation type
RN7SKP278	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73346685	chr10:110700755-110700756	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs11596847	chr10:110700772-110700773	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs550668742	chr10:110700789-110700790	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs368787942	chr10:110700825-110700826	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs570278706	chr10:110700836-110700837	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs536092377	chr10:110700845-110700846	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs543132977	chr10:110700847-110700848	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs555660390	chr10:110700859-110700860	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs566408432	chr10:110700872-110700873	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs377490638	chr10:110700873-110700874	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs534996810	chr10:110700892-110700893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs373552252	chr10:110700905-110700906	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs561311238	chr10:110700937-110700938	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs34452619	chr10:110700943-110700944	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs116573950	chr10:110700964-110700965	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs577568785	chr10:110700970-110700971	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs543529599	chr10:110700973-110700974	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs556998945	chr10:110701015-110701016	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs72829951	chr10:110701023-110701024	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs541060307	chr10:110701032-110701033	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs542834011	chr10:110701065-110701066	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs368816832	chr10:110701068-110701069	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs528398288	chr10:110701331-110701332	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs368023882	chr10:110701338-110701339	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs371589799	chr10:110701343-110701344	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs375887932	chr10:110701345-110701346	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs368723767	chr10:110701348-110701349	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs66502952	chr10:110701366-110701367	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs544931724	chr10:110701373-110701374	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs34262879	chr10:110701387-110701388	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs565341794	chr10:110701420-110701421	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs544104695	chr10:110701454-110701455	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs12769365	chr10:110701491-110701492	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs11194309	chr10:110701526-110701527	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs183914411	chr10:110701527-110701528	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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