Variant report

Variant	esv3334295
Chromosome Location	chr10:26920346-26922744
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APBB1IP-3	chr10:26921785-26921901	NONHSAT011843
2	lnc-APBB1IP-3	chr10:26920245-26920348	NONHSAT011843

Extended variants
information (count: 101 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:101 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78567772	chr10:26920355-26920356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs182044961	chr10:26920362-26920363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs567403085	chr10:26920364-26920365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs149399723	chr10:26920446-26920447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs562054847	chr10:26920472-26920473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs370984516	chr10:26920492-26920493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs376631974	chr10:26920508-26920509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71403865	chr10:26920524-26920525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs184842025	chr10:26920583-26920584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs189168895	chr10:26920646-26920647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs181671866	chr10:26920659-26920660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112997536	chr10:26920664-26920665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186391512	chr10:26920704-26920705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs578118196	chr10:26920714-26920715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs543806208	chr10:26920722-26920723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs191250926	chr10:26920744-26920745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs557635785	chr10:26920813-26920814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs533801829	chr10:26920818-26920819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574208329	chr10:26920819-26920820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs181273326	chr10:26920838-26920839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559754641	chr10:26920859-26920860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111695360	chr10:26920943-26920944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs545501340	chr10:26920958-26920959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564972404	chr10:26921005-26921006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs530737655	chr10:26921037-26921038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs528932427	chr10:26921040-26921041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561251852	chr10:26921044-26921045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs567412100	chr10:26921149-26921150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs529911412	chr10:26921151-26921152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs140399822	chr10:26921152-26921153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs566116567	chr10:26921175-26921176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538389843	chr10:26921196-26921197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552243932	chr10:26921207-26921208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142699105	chr10:26921208-26921209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537657475	chr10:26921213-26921214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200258493	chr10:26921229-26921230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs561480668	chr10:26921235-26921236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200753996	chr10:26921240-26921241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574407722	chr10:26921256-26921257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536923928	chr10:26921316-26921317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs373362767	chr10:26921349-26921350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs185240333	chr10:26921360-26921361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs573263442	chr10:26921374-26921375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545029312	chr10:26921375-26921376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565389395	chr10:26921376-26921377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs189657908	chr10:26921394-26921395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs183391806	chr10:26921395-26921396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371257695	chr10:26921454-26921455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs147341380	chr10:26921480-26921481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs544859174	chr10:26921504-26921505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26912000-26926400	Weak transcription	Thymus	Thymus

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