Variant report

Variant	esv3335635
Chromosome Location	chr6:26864873-26872771
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H2AG-6	chr6:26865674-26866556	NONHSAT108314

Extended variants
information (count: 334 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:334 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540903776	chr6:26864905-26864906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs564375640	chr6:26864908-26864909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201721490	chr6:26864938-26864939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs563340916	chr6:26864962-26864963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs9286717	chr6:26864989-26864990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527697858	chr6:26865010-26865011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199673883	chr6:26865015-26865016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9717366	chr6:26865032-26865033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs565665142	chr6:26865045-26865046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs528123969	chr6:26865066-26865067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs9467927	chr6:26865081-26865082	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs571878475	chr6:26865083-26865084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs537355899	chr6:26865113-26865114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184219694	chr6:26865166-26865167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs567800358	chr6:26865176-26865177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs150509070	chr6:26865182-26865183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138329826	chr6:26865197-26865198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs372041870	chr6:26865198-26865199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538612041	chr6:26865199-26865200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9295713	chr6:26865215-26865216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs180981111	chr6:26865256-26865257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs9688956	chr6:26865268-26865269	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
23	rs9688544	chr6:26865269-26865270	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
24	rs532811468	chr6:26865327-26865328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs562427029	chr6:26865338-26865339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200747044	chr6:26865346-26865347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547778550	chr6:26865380-26865381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs201367765	chr6:26865384-26865385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573917335	chr6:26865390-26865391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs542723077	chr6:26865394-26865395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs559464603	chr6:26865397-26865398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs528213889	chr6:26865418-26865419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551319140	chr6:26865434-26865435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs564772468	chr6:26865458-26865459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531223312	chr6:26865492-26865493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs12181587	chr6:26865500-26865501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs62400838	chr6:26865550-26865551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs567824096	chr6:26865575-26865576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs71557358	chr6:26865600-26865601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs546804668	chr6:26865604-26865605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566585587	chr6:26865649-26865650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12178306	chr6:26865669-26865670	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs140115952	chr6:26865703-26865704	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs12180063	chr6:26865728-26865729	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs575590451	chr6:26865734-26865735	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs374808080	chr6:26865738-26865739	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs537337054	chr6:26865740-26865741	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs369169186	chr6:26865745-26865746	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs190565582	chr6:26865753-26865754	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs574008128	chr6:26865754-26865755	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21509527	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26838000-26866200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:26841400-26866200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:26844400-26865800	Weak transcription	Ovary	ovary
4	chr6:26844400-26872000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:26849200-26866800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:26849400-26866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:26850400-26865000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:26852000-26866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:26861400-26865800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:26862200-26866600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:26864400-26866600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:26865800-26867600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:26866400-26867000	Enhancers	Fetal Muscle Leg	muscle
14	chr6:26866600-26866800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:26866600-26867200	Enhancers	Fetal Muscle Trunk	muscle
16	chr6:26866600-26867400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:26866800-26867000	Enhancers	Skeletal Muscle Male	skeletal muscle

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