Variant report

Variant	esv3335658
Chromosome Location	chr7:53643792-53660461
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 248 )
Associated
traits (count: 119 )

Variant overlapped rSNPs/rCNVs (count:248 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs57252465	chr7:53655025-53655026	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs144007549	chr7:53655040-53655041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs183875634	chr7:53655042-53655043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs544240081	chr7:53655057-53655058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs57169846	chr7:53655073-53655074	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs533074869	chr7:53655208-53655209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs543848984	chr7:53655221-53655222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs188062930	chr7:53655235-53655236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs75274610	chr7:53655243-53655244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs550154520	chr7:53655247-53655248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs568527546	chr7:53655252-53655253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs115546196	chr7:53655298-53655299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs560376315	chr7:53655304-53655305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs566305709	chr7:53655313-53655314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs36077371	chr7:53655327-53655328	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs540110737	chr7:53655336-53655337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558132460	chr7:53655371-53655372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs576694907	chr7:53655377-53655378	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs527450780	chr7:53655408-53655409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs721386	chr7:53655409-53655410	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs721387	chr7:53655413-53655414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs574183145	chr7:53655422-53655423	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs541568557	chr7:53655469-53655470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs147428563	chr7:53655476-53655477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs537954053	chr7:53655533-53655534	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs191272995	chr7:53655565-53655566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs577907356	chr7:53655594-53655595	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs17701511	chr7:53655595-53655596	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs139814869	chr7:53655678-53655679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs145325358	chr7:53655712-53655713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs568513640	chr7:53655744-53655745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529385417	chr7:53655775-53655776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372017673	chr7:53655776-53655777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371760118	chr7:53655780-53655781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs73696714	chr7:53655785-53655786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375318057	chr7:53655786-53655787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs202127248	chr7:53655795-53655796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs10281850	chr7:53655796-53655797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs67252695	chr7:53655798-53655799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs75111360	chr7:53655806-53655807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547947569	chr7:53655807-53655808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375943465	chr7:53655812-53655813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183790012	chr7:53655846-53655847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188535444	chr7:53655858-53655859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558333885	chr7:53655869-53655870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375738269	chr7:53655870-53655871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570212273	chr7:53655936-53655937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs192648543	chr7:53655959-53655960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555734000	chr7:53655960-53655961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs184986557	chr7:53655961-53655962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:119)

Disease	PMID	Source
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Biliary cancer	19435499	CNVD
Wilms tumour	21544195	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	22495311	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastric cancer	24379144	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Esophageal cancer	21851588	CNVD
Non-small cell lung cancer	17643093	CNVD
Ovarian cancer	18182111	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17369134	CNVD
Barrett''s esophagus	18559552	CNVD
head and neck squamous cell carcinoma	16943533	CNVD
Anaplastic thyroid cancer	17079354	CNVD
Basal-like breast cancer	17875215	CNVD
Colorectal cancer	16882699	CNVD
Colorectal cancer	18794099	CNVD
Gastrointestinal stromal cancer	17643098	CNVD
Lung cancer	18381415	CNVD
Metastatic colorectal cancer	17664472	CNVD
Non-small cell lung cancer	19255323	CNVD
Non-small cell lung cancer	17673923	CNVD
Non-small cell lung cancer	17975165	CNVD
Non-small cell lung cancer	19622585	CNVD
Ovarian cancer	16607561	CNVD
Squamous cell cancer	19670535	CNVD
head and neck squamous cell carcinoma	16818711	CNVD
small cell lung cancer	18829487	CNVD
Breast cancer	17661082	CNVD
Adenocarcinoma	19260752	CNVD
Esophageal cancer	16575012	CNVD
Lung adenocarcinoma	19138956	CNVD
Lung adenocarcinoma	18379350	CNVD
Lung adenocarcinoma	18258923	CNVD
Lung cancer	19138956	CNVD
Lung cancer	18379350	CNVD
Lung cancer	18258923	CNVD
Non-small cell lung cancer	18304967	CNVD
Non-small cell lung cancer	19451690	CNVD
Non-small cell lung cancer	19260752	CNVD
Non-small cell lung cancer	17079354	CNVD
Non-small cell lung cancer	18559607	CNVD
Rectal cancer	19506820	CNVD
Triple-negative breast cancer	18950515	CNVD
head and neck squamous cell carcinoma	18813952	CNVD
Non-small cell lung cancer	17504988	CNVD
Non-small cell lung cancer	16943533	CNVD
Non-small cell lung cancer	18509184	CNVD
head and neck squamous cell carcinoma	17538160	CNVD
Colorectal cancer	19712476	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Lung cancer	19671679	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
small cell lung cancer	20016488	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Cognitive impairment	21505072	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53655000-53655600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:53655600-53671400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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