Variant report
Variant | esv3335990 |
---|---|
Chromosome Location | chr8:62665048-62667346 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:62662413..62665090-chr8:62669593..62672242,2 | K562 | blood: | |
2 | chr8:62660931..62663010-chr8:62666480..62668831,2 | K562 | blood: | |
3 | chr8:62618042..62628934-chr8:62666240..62683608,38 | K562 | blood: | |
4 | chr8:62657535..62660480-chr8:62666874..62669371,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000264408 | chromatin interactions |
ENSG00000198363 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs534925105 | chr8:62665101-62665102 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs62506009 | chr8:62665213-62665214 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs537187357 | chr8:62665320-62665321 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs547135624 | chr8:62665446-62665447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs568479162 | chr8:62665513-62665514 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs371106910 | chr8:62665514-62665515 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs374271111 | chr8:62665664-62665665 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs111698780 | chr8:62665700-62665701 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs368343246 | chr8:62666021-62666022 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs142758521 | chr8:62666045-62666046 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs375464473 | chr8:62666089-62666090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs367612822 | chr8:62666289-62666290 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
13 | rs575702287 | chr8:62666318-62666319 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
14 | rs539804422 | chr8:62666335-62666336 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
15 | rs191235186 | chr8:62666397-62666398 | Weak transcription | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
16 | rs573347483 | chr8:62666414-62666415 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
17 | rs540884743 | chr8:62666422-62666423 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
18 | rs559477417 | chr8:62666433-62666434 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
19 | rs574689960 | chr8:62666443-62666444 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
20 | rs542096839 | chr8:62666463-62666464 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
21 | rs147334411 | chr8:62666556-62666557 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
22 | rs563199328 | chr8:62666567-62666568 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
23 | rs530425740 | chr8:62666594-62666595 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
24 | rs564652010 | chr8:62666616-62666617 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
25 | rs184015194 | chr8:62666625-62666626 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
26 | rs551724999 | chr8:62666627-62666628 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
27 | rs141009301 | chr8:62666630-62666631 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
28 | rs188352354 | chr8:62666631-62666632 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
29 | rs369424444 | chr8:62666635-62666636 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs563852043 | chr8:62666636-62666637 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs373973201 | chr8:62666637-62666638 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs376976965 | chr8:62666641-62666642 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs79031690 | chr8:62666647-62666648 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs544021809 | chr8:62666650-62666651 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
35 | rs77445720 | chr8:62666653-62666654 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs79301340 | chr8:62666659-62666660 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
37 | rs148920628 | chr8:62666665-62666666 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
38 | rs78029215 | chr8:62666671-62666672 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
39 | rs144196471 | chr8:62666677-62666678 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
40 | rs539863007 | chr8:62666678-62666679 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
41 | rs79625472 | chr8:62666683-62666684 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
42 | rs573284165 | chr8:62666684-62666685 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
43 | rs534295483 | chr8:62666686-62666687 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
44 | rs138689486 | chr8:62666688-62666689 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
45 | rs78810662 | chr8:62666689-62666690 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
46 | rs73271282 | chr8:62666695-62666696 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
47 | rs571743886 | chr8:62666698-62666699 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
48 | rs150682801 | chr8:62666705-62666706 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
49 | rs182064126 | chr8:62666706-62666707 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
50 | rs377200755 | chr8:62666709-62666710 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Wilms tumour | 21544195 | CNVD |
Gastric cancer | 17908304 | CNVD |
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Seminomas | 18059402 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 17603634 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Testicular cancer | 18059402 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
Esophageal cancer | 20955586 | CNVD |
Multiple myeloma | 16461302 | CNVD |
abnormal development | 18461090 | CNVD |
Cancer | 20164920 | CNVD |
Oral cancer | 21386901 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Langer-Giedion syndrome | 22283845 | CNVD |
Cancer | 21637783 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 20632083 | CNVD |
Breast cancer | 19602461 | CNVD |
Cancer | 22429812 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oral cancer | 19627613 | CNVD |
Prostate cancer | 21088497 | CNVD |
colon cancer | 17210682 | CNVD |
Breast cancer | 21264507 | CNVD |
Breast cancer | 22028636 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Gastric cancer | 17167181 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 16461572 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
head and neck squamous cell carcinoma | 18028549 | CNVD |
Breast cancer | 17001317 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Lung cancer | 18438408 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Breast cancer | 16608533 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Prostate cancer | 18632612 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Prostate cancer | 16573809 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Melanoma | 22183965 | CNVD |
Cancer | 21949371 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Acute myeloid leukemia | 21358987 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Adenocarcinoma | 21044232 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Colorectal cancer | 21645411 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Gastric cancer | 22014070 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:62658600-62666800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
2 | chr8:62661400-62666800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
3 | chr8:62663200-62666400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
4 | chr8:62663400-62666800 | Weak transcription | Stomach Mucosa | stomach |
5 | chr8:62664200-62669000 | Weak transcription | HepG2 | liver |
6 | chr8:62664400-62666800 | Weak transcription | A549 | lung |
7 | chr8:62664400-62666800 | Weak transcription | Hela-S3 | cervix |
8 | chr8:62666400-62666800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
9 | chr8:62666800-62667000 | Flanking Active TSS | Hela-S3 | cervix |
10 | chr8:62666800-62667000 | Enhancers | NH-A | brain |
11 | chr8:62666800-62667200 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
12 | chr8:62666800-62667200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
13 | chr8:62666800-62667200 | Enhancers | Stomach Mucosa | stomach |
14 | chr8:62666800-62667200 | Enhancers | Osteobl | bone |
15 | chr8:62666800-62667400 | Enhancers | A549 | lung |
16 | chr8:62666800-62667800 | Enhancers | Muscle Satellite Cultured Cells | -- |
17 | chr8:62667000-62667200 | Enhancers | Hela-S3 | cervix |
18 | chr8:62667200-62667400 | Flanking Active TSS | Hela-S3 | cervix |
19 | chr8:62667200-62668200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
20 | chr8:62667200-62668200 | Weak transcription | Stomach Mucosa | stomach |
21 | chr8:62667200-62668400 | Weak transcription | Osteobl | bone |
22 | chr8:62667200-62669000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
23 | chr8:62667200-62669000 | Weak transcription | NH-A | brain |
24 | chr8:62667200-62669600 | Enhancers | Adipose Nuclei | Adipose |