Variant report

Variant	esv3336598
Chromosome Location	chr10:42354936-42422444
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
2	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
3	chr10:42396677..42397179-chr2:92268827..92269338,2	MCF-7	breast:
4	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
5	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
6	chr10:42396404..42399699-chr10:42528302..42530349,4	MCF-7	breast:
7	chr10:42384702..42385548-chr19:46850298..46850828,2	MCF-7	breast:
8	chr1:149222942..149224601-chr10:42397745..42399854,2	MCF-7	breast:
9	chr10:42385049..42385862-chr2:89835873..89836374,2	MCF-7	breast:
10	chr10:42385048..42385927-chr20:45917973..45918793,2	MCF-7	breast:
11	chr10:42385202..42385933-chr7:149119111..149120081,2	MCF-7	breast:
12	chr10:42398870..42399833-chr14:43322802..43323708,2	MCF-7	breast:
13	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:
14	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
15	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
16	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-11	chr10:42385001-42385282	NONHSAT012848
2	lnc-CCNYL2-11	chr10:42407539-42407748	NONHSAT012850
3	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847
4	lnc-BMS1-12	chr10:42398302-42398937	NONHSAT012847
5	lnc-BMS1-12	chr10:42399434-42399525	NONHSAT012847
6	lnc-BMS1-12	chr10:42397884-42397971	NONHSAT012847
7	lnc-CCNYL2-11	chr10:42406659-42406684	NONHSAT012850
8	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847
9	lnc-BMS1-12	chr10:42406916-42406946	NONHSAT012847
10	lnc-BMS1-12	chr10:42400201-42400696	NONHSAT012847
11	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
12	lnc-BMS1-12	chr10:42399130-42399193	NONHSAT012847
13	lnc-BMS1-12	chr10:42398139-42398174	NONHSAT012847
14	lnc-BMS1-12	chr10:42383750-42383799	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000198931	chromatin interactions
ENSG00000261842	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000011485	chromatin interactions

Extended variants
information (count: 15930 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:15930 , 50 per page) page: 1 2 3 4 5 6 7 ... 319

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs199967771	chr10:42354937-42354938	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs62646666	chr10:42354942-42354943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs376817159	chr10:42354953-42354954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs372748098	chr10:42354954-42354955	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs62646667	chr10:42354956-42354957	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs111208783	chr10:42354966-42354967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs370113726	chr10:42354971-42354972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs62646668	chr10:42354973-42354974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs374390614	chr10:42354979-42354980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs569264227	chr10:42354982-42354983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs532281267	chr10:42354985-42354986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs62646669	chr10:42354988-42354989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs371106214	chr10:42354993-42354994	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs374278760	chr10:42354996-42354997	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs368448451	chr10:42355001-42355002	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs372480403	chr10:42355002-42355003	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs371324863	chr10:42355009-42355010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs111208784	chr10:42355011-42355012	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs62646670	chr10:42355028-42355029	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs373918171	chr10:42355035-42355036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs199826718	chr10:42355036-42355037	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs377236608	chr10:42355045-42355046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs370175555	chr10:42355049-42355050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs374939230	chr10:42355050-42355051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs111208785	chr10:42355053-42355054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs373849544	chr10:42355055-42355056	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs201721184	chr10:42355057-42355058	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs371302508	chr10:42355070-42355071	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs111208786	chr10:42355076-42355077	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs376646423	chr10:42355081-42355082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs551977126	chr10:42355086-42355087	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs368412860	chr10:42355092-42355093	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs111208787	chr10:42355095-42355096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs62641314	chr10:42355114-42355115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs62646671	chr10:42355133-42355134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs62646672	chr10:42355144-42355145	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs377249440	chr10:42355145-42355146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs571845544	chr10:42355147-42355148	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs372782048	chr10:42355153-42355154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs534150904	chr10:42355154-42355155	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs554372914	chr10:42355155-42355156	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs62646673	chr10:42355156-42355157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs536898097	chr10:42355157-42355158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs373693720	chr10:42355159-42355160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs111208789	chr10:42355161-42355162	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs376388743	chr10:42355173-42355174	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs369558283	chr10:42355183-42355184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs576494205	chr10:42355185-42355186	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs191608139	chr10:42355187-42355188	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs368358473	chr10:42355191-42355192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1172 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42356400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
12	chr10:42355000-42356400	ZNF genes & repeats	NHDF-Ad	bronchial
13	chr10:42355000-42356400	ZNF genes & repeats	NHEK	skin
14	chr10:42355000-42356800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr10:42355000-42357800	ZNF genes & repeats	Gastric	stomach
16	chr10:42355000-42358800	ZNF genes & repeats	Fetal Brain Female	brain
17	chr10:42355000-42359200	ZNF genes & repeats	Brain Germinal Matrix	brain
18	chr10:42355000-42360400	ZNF genes & repeats	NHLF	lung
19	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
20	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
21	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
28	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
29	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
31	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
32	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
33	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
34	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
35	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
36	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
38	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
40	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
42	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
43	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
44	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
48	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
50	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood

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