Variant report

Variant	esv3336801
Chromosome Location	chr19:21023132-21023559
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73530585	chr19:21023143-21023144	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs548744137	chr19:21023152-21023153	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs67816767	chr19:21023169-21023170	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs79337022	chr19:21023170-21023171	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs531027478	chr19:21023175-21023176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs112238772	chr19:21023191-21023192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs113887606	chr19:21023195-21023196	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs149772400	chr19:21023204-21023205	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs67914199	chr19:21023207-21023208	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs566756824	chr19:21023228-21023229	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs535411853	chr19:21023245-21023246	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs147630431	chr19:21023246-21023247	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs35739003	chr19:21023252-21023253	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs2545183	chr19:21023258-21023259	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs184658468	chr19:21023262-21023263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs375503918	chr19:21023271-21023272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs539827389	chr19:21023284-21023285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs559747754	chr19:21023296-21023297	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs140652563	chr19:21023297-21023298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs542200797	chr19:21023341-21023342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs375248672	chr19:21023344-21023345	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs562415930	chr19:21023392-21023393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs530959126	chr19:21023424-21023425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs2547177	chr19:21023438-21023439	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs189441555	chr19:21023482-21023483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs372751283	chr19:21023509-21023510	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs80144407	chr19:21023510-21023511	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs370006985	chr19:21023523-21023524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs372515287	chr19:21023531-21023532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs374907918	chr19:21023551-21023552	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Schizophrenia	20967226	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21019400-21024800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:21020800-21024200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:21022400-21024000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:21022600-21023400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr19:21022600-21024000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr19:21022800-21024000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr19:21023000-21023200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr19:21023000-21023600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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