Variant report
Variant | esv3336973 |
---|---|
Chromosome Location | chr4:19432853-19433399 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs62298735 | chr4:19432869-19432870 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs186967574 | chr4:19432951-19432952 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs191422835 | chr4:19432965-19432966 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs565654276 | chr4:19432973-19432974 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs76709883 | chr4:19432991-19432992 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs572696777 | chr4:19433024-19433025 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs546474823 | chr4:19433027-19433028 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs373949471 | chr4:19433032-19433033 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs564682836 | chr4:19433047-19433048 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs182130221 | chr4:19433069-19433070 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs571608630 | chr4:19433084-19433085 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs539281686 | chr4:19433085-19433086 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs550721420 | chr4:19433090-19433091 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs147310018 | chr4:19433092-19433093 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs557437353 | chr4:19433095-19433096 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs529695341 | chr4:19433101-19433102 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs187760400 | chr4:19433119-19433120 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs369595456 | chr4:19433278-19433279 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Oral squamous cell carcinoma | 17134496 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 17603634 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Cancer | 21183584 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Breast cancer | 17133270 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Melanoma | 22183965 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ovarian cancer | 17908972 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Burkitt''s lymphoma | 20823134 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Cancer | 20164919 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:19429400-19434000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr4:19432800-19433200 | ZNF genes & repeats | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
3 | chr4:19433200-19433600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
4 | chr4:19433200-19433800 | Active TSS | Fetal Heart | heart |