Variant report
| Variant | esv3337148 |
|---|---|
| Chromosome Location | chr10:98117871-98118085 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr10:98117893-98118174 | A549 | lung: | n/a | chr10:98117989-98118000 |
| 2 | CEBPB | chr10:98117958-98118114 | HepG2 | liver: | n/a | chr10:98117989-98118000 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OPALIN | TF binding region |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs529033863 | chr10:98117875-98117876 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs11188734 | chr10:98117931-98117932 | Weak transcription Active TSS | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs187409726 | chr10:98117937-98117938 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 4 | rs77200669 | chr10:98117941-98117942 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 5 | rs371547546 | chr10:98117944-98117945 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 6 | rs61616596 | chr10:98117973-98117974 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 7 | rs35868070 | chr10:98118014-98118015 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 8 | rs531229209 | chr10:98118032-98118033 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
| 9 | rs373140814 | chr10:98118046-98118047 | Weak transcription Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Variant related diseases (count:64)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Cockayne syndrome | 18421352 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Glioma | 21971842 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Breast cancer | 21364760 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Lung cancer | 16773561 | CNVD |
| Colorectal cancer | 16912164 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Autosomal dominant partial epilepsy | 18472482 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Glioblastoma multiforme | 21510904 | CNVD |
| Melanoma | 20877625 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:98106200-98126000 | Weak transcription | Aorta | Aorta |
| 2 | chr10:98115000-98119000 | Active TSS | Brain Anterior Caudate | brain |
| 3 | chr10:98115200-98119600 | Active TSS | Brain Angular Gyrus | brain |
| 4 | chr10:98116000-98118800 | Active TSS | Brain Hippocampus Middle | brain |
| 5 | chr10:98116400-98118800 | Active TSS | Brain Inferior Temporal Lobe | brain |
| 6 | chr10:98117000-98123800 | Weak transcription | Right Atrium | heart |
| 7 | chr10:98117000-98134400 | Weak transcription | Thymus | Thymus |
| 8 | chr10:98117400-98119000 | Active TSS | Brain Cingulate Gyrus | brain |
| 9 | chr10:98117600-98118800 | Active TSS | Brain Dorsolateral Prefrontal Cortex | brain |
| 10 | chr10:98117600-98119000 | Active TSS | Brain Substantia Nigra | brain |
