Variant report

Variant	esv3338527
Chromosome Location	chr9:22651452-22655650
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDKN2B-5	chr9:22651795-22652209	NONHSAT130440

Extended variants
information (count: 155 )
Associated
traits (count: 149 )

Variant overlapped rSNPs/rCNVs (count:155 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs368979228	chr9:22651460-22651461	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs113942386	chr9:22651478-22651479	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs541257286	chr9:22651479-22651480	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs60326321	chr9:22651484-22651485	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs561170184	chr9:22651491-22651492	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs116026998	chr9:22651513-22651514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs550007634	chr9:22651541-22651542	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs563797897	chr9:22651554-22651555	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs61011155	chr9:22651621-22651622	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs35099020	chr9:22651623-22651624	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs35556552	chr9:22651647-22651648	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs397813212	chr9:22651652-22651653	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs374462696	chr9:22651657-22651658	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs551081226	chr9:22651700-22651701	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs563914754	chr9:22651724-22651725	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs569733919	chr9:22651725-22651726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs571593234	chr9:22651734-22651735	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs142423646	chr9:22651788-22651789	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs10965411	chr9:22651796-22651797	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs556767549	chr9:22651801-22651802	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs112133796	chr9:22651826-22651827	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs78978266	chr9:22651834-22651835	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs146003322	chr9:22651854-22651855	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs375766333	chr9:22651876-22651877	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs16906451	chr9:22651877-22651878	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs556033184	chr9:22651882-22651883	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs576080243	chr9:22651898-22651899	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
28	rs115762274	chr9:22651945-22651946	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs558109777	chr9:22651957-22651958	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs10117999	chr9:22651989-22651990	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs112525216	chr9:22652035-22652036	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs200252675	chr9:22652039-22652040	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs377456926	chr9:22652041-22652042	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs561588969	chr9:22652075-22652076	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs138635229	chr9:22652139-22652140	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
36	rs184634275	chr9:22652172-22652173	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
37	rs188655373	chr9:22652181-22652182	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs532614674	chr9:22652184-22652185	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs141743582	chr9:22652215-22652216	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs559799516	chr9:22652260-22652261	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs552574679	chr9:22652285-22652286	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs1414694	chr9:22652308-22652309	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs370279785	chr9:22652327-22652328	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs528454567	chr9:22652333-22652334	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs547717188	chr9:22652337-22652338	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs567548854	chr9:22652364-22652365	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs144647709	chr9:22652375-22652376	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs181392022	chr9:22652405-22652406	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs148477910	chr9:22652415-22652416	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs538369752	chr9:22652439-22652440	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:149)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21858162	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22650000-22653800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:22650800-22652400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:22650800-22653200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:22651000-22652000	Enhancers	Adipose Nuclei	Adipose
5	chr9:22651200-22657000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:22652000-22656400	Weak transcription	Adipose Nuclei	Adipose
7	chr9:22652400-22652600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:22652600-22652800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:22652800-22653000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:22653000-22653200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:22653200-22654600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:22653200-22655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:22653800-22654000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:22654000-22654400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:22654200-22654800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:22654400-22655600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:22654600-22655000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:22654800-22657000	Weak transcription	Liver	Liver
19	chr9:22654800-22663600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:22655000-22656200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:22655000-22657200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:22655600-22657000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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