Variant report

Variant	esv3338752
Chromosome Location	chr16:46395068-46395161
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28881488	chr16:46395068-46395069	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7196468	chr16:46395070-46395071	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs28799703	chr16:46395071-46395072	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs4595946	chr16:46395072-46395073	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs28859408	chr16:46395073-46395074	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs57550617	chr16:46395074-46395075	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs28764892	chr16:46395075-46395076	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs28856378	chr16:46395076-46395077	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs59021561	chr16:46395077-46395078	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs28790712	chr16:46395080-46395081	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs28823877	chr16:46395081-46395082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs28878876	chr16:46395082-46395083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs4088792	chr16:46395083-46395084	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs59112555	chr16:46395085-46395086	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs28896190	chr16:46395086-46395087	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs28860918	chr16:46395089-46395090	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs28871415	chr16:46395090-46395091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs60463855	chr16:46395091-46395092	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs28793365	chr16:46395092-46395093	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs4009068	chr16:46395093-46395094	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs28833229	chr16:46395094-46395095	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs4575697	chr16:46395095-46395096	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs4289160	chr16:46395096-46395097	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs28797235	chr16:46395097-46395098	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs28829619	chr16:46395098-46395099	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs4294973	chr16:46395101-46395102	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs28867473	chr16:46395102-46395103	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs28821297	chr16:46395103-46395104	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs4337450	chr16:46395104-46395105	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs28848327	chr16:46395106-46395107	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs56075261	chr16:46395107-46395108	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs4967824	chr16:46395108-46395109	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs58110794	chr16:46395109-46395110	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs59680442	chr16:46395111-46395112	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28878241	chr16:46395112-46395113	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9746592	chr16:46395113-46395114	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs28888105	chr16:46395114-46395115	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs58644540	chr16:46395115-46395116	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs28849722	chr16:46395116-46395117	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs9673492	chr16:46395117-46395118	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs28750822	chr16:46395118-46395119	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs28821314	chr16:46395120-46395121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs60664941	chr16:46395121-46395122	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs59671754	chr16:46395122-46395123	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs28804721	chr16:46395123-46395124	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs28865719	chr16:46395126-46395127	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs36142666	chr16:46395127-46395128	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs28866882	chr16:46395128-46395129	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4284801	chr16:46395129-46395130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12325112	chr16:46395130-46395131	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46385800-46397000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr16:46385800-46397000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr16:46385800-46397000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:46385800-46397000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr16:46385800-46397000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr16:46385800-46397000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
7	chr16:46385800-46397000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr16:46385800-46397000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr16:46385800-46397000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr16:46385800-46397000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr16:46385800-46397000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:46385800-46397000	ZNF genes & repeats	Liver	Liver
13	chr16:46385800-46397000	ZNF genes & repeats	Colon Smooth Muscle	Colon
14	chr16:46385800-46397000	ZNF genes & repeats	Fetal Brain Male	brain
15	chr16:46385800-46397000	ZNF genes & repeats	Left Ventricle	heart
16	chr16:46385800-46397000	ZNF genes & repeats	Psoas Muscle	Psoas
17	chr16:46385800-46397000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
18	chr16:46385800-46397000	ZNF genes & repeats	Small Intestine	intestine
19	chr16:46385800-46397000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr16:46385800-46397200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr16:46385800-46397600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr16:46385800-46404000	ZNF genes & repeats	Primary B cells from cord blood	blood
23	chr16:46386000-46395600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
24	chr16:46386000-46397000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:46386000-46397000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
26	chr16:46386000-46397000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
27	chr16:46386000-46397000	ZNF genes & repeats	Gastric	stomach
28	chr16:46386800-46397000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr16:46387600-46395600	ZNF genes & repeats	Fetal Heart	heart
30	chr16:46387600-46397000	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr16:46387600-46397000	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr16:46387600-46397000	ZNF genes & repeats	Fetal Lung	lung
33	chr16:46387600-46397000	ZNF genes & repeats	NH-A	brain
34	chr16:46388000-46397000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr16:46388000-46397000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
36	chr16:46388000-46397000	ZNF genes & repeats	Brain Germinal Matrix	brain
37	chr16:46388000-46397000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
38	chr16:46388000-46397000	ZNF genes & repeats	Dnd41	blood
39	chr16:46388200-46396800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr16:46388200-46397000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr16:46388200-46397000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr16:46388200-46397000	ZNF genes & repeats	Ovary	ovary
43	chr16:46388400-46395600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
44	chr16:46388400-46395600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
45	chr16:46388400-46395600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr16:46388400-46395600	ZNF genes & repeats	Thymus	Thymus
47	chr16:46388400-46397000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr16:46388400-46397000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:46388400-46397000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
50	chr16:46388400-46397000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links