Variant report

Variant	esv3338957
Chromosome Location	chr16:46406472-46412063
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1480 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:1480 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113058239	chr16:46406472-46406473	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
2	rs59540966	chr16:46406476-46406477	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
3	rs9673183	chr16:46406477-46406478	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
4	rs5816554	chr16:46406478-46406479	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
5	rs59557707	chr16:46406479-46406480	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
6	rs9921784	chr16:46406481-46406482	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
7	rs56310855	chr16:46406482-46406483	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
8	rs59735018	chr16:46406483-46406484	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
9	rs58752753	chr16:46406484-46406485	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
10	rs9708288	chr16:46406486-46406487	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
11	rs28805680	chr16:46406490-46406491	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
12	rs8045066	chr16:46406491-46406492	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
13	rs9746854	chr16:46406492-46406493	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
14	rs58233462	chr16:46406493-46406494	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
15	rs58339690	chr16:46406495-46406496	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
16	rs58153606	chr16:46406496-46406497	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
17	rs61393636	chr16:46406497-46406498	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
18	rs58990584	chr16:46406499-46406500	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
19	rs9745896	chr16:46406500-46406501	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
20	rs60882409	chr16:46406502-46406503	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
21	rs60850141	chr16:46406504-46406505	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
22	rs57183078	chr16:46406505-46406506	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
23	rs28787670	chr16:46406507-46406508	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
24	rs9673907	chr16:46406509-46406510	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
25	rs9673908	chr16:46406510-46406511	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
26	rs60478722	chr16:46406513-46406514	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
27	rs61556096	chr16:46406515-46406516	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
28	rs7498357	chr16:46406517-46406518	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
29	rs28850705	chr16:46406518-46406519	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
30	rs9745899	chr16:46406520-46406521	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
31	rs58879787	chr16:46406521-46406522	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
32	rs60160920	chr16:46406523-46406524	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
33	rs9806868	chr16:46406524-46406525	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
34	rs59906539	chr16:46406528-46406529	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
35	rs9928086	chr16:46406529-46406530	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
36	rs9285993	chr16:46406530-46406531	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
37	rs9708974	chr16:46406531-46406532	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
38	rs59983674	chr16:46406532-46406533	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
39	rs28820347	chr16:46406535-46406536	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
40	rs9745389	chr16:46406536-46406537	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
41	rs28844912	chr16:46406538-46406539	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
42	rs9796869	chr16:46406539-46406540	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
43	rs4589577	chr16:46406540-46406541	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
44	rs4967179	chr16:46406541-46406542	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
45	rs6422054	chr16:46406542-46406543	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
46	rs9673579	chr16:46406543-46406544	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
47	rs9745390	chr16:46406546-46406547	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
48	rs9745391	chr16:46406548-46406549	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
49	rs56260071	chr16:46406549-46406550	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
50	rs28865590	chr16:46406550-46406551	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:345 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46398000-46414400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:46398000-46416000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr16:46404800-46406800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr16:46404800-46406800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr16:46404800-46406800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:46404800-46406800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
7	chr16:46404800-46406800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
8	chr16:46404800-46406800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
9	chr16:46404800-46406800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
10	chr16:46404800-46406800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:46404800-46406800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
12	chr16:46404800-46406800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr16:46404800-46406800	ZNF genes & repeats	Liver	Liver
14	chr16:46404800-46406800	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr16:46404800-46406800	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr16:46404800-46406800	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr16:46404800-46406800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr16:46404800-46406800	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr16:46404800-46406800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr16:46404800-46406800	ZNF genes & repeats	Fetal Brain Male	brain
21	chr16:46404800-46406800	ZNF genes & repeats	Fetal Brain Female	brain
22	chr16:46404800-46406800	ZNF genes & repeats	Fetal Heart	heart
23	chr16:46404800-46406800	ZNF genes & repeats	Fetal Lung	lung
24	chr16:46404800-46406800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
25	chr16:46404800-46406800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr16:46404800-46406800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr16:46404800-46406800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
28	chr16:46404800-46406800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr16:46404800-46406800	ZNF genes & repeats	Stomach Mucosa	stomach
30	chr16:46404800-46406800	ZNF genes & repeats	Spleen	Spleen
31	chr16:46404800-46406800	ZNF genes & repeats	Hela-S3	cervix
32	chr16:46404800-46406800	ZNF genes & repeats	HSMMtube	muscle
33	chr16:46404800-46406800	ZNF genes & repeats	Osteobl	bone
34	chr16:46404800-46407800	ZNF genes & repeats	A549	lung
35	chr16:46404800-46407800	ZNF genes & repeats	HUVEC	blood vessel
36	chr16:46404800-46407800	ZNF genes & repeats	K562	blood
37	chr16:46404800-46407800	ZNF genes & repeats	NH-A	brain
38	chr16:46404800-46408000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
39	chr16:46404800-46408000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chr16:46404800-46408000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr16:46404800-46408000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
42	chr16:46404800-46408000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr16:46404800-46408000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:46404800-46408000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr16:46404800-46408000	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr16:46404800-46408000	ZNF genes & repeats	Left Ventricle	heart
47	chr16:46404800-46408000	ZNF genes & repeats	HMEC	breast
48	chr16:46404800-46408200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr16:46404800-46408200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr16:46404800-46408200	ZNF genes & repeats	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links