Variant report

Variant	esv3338981
Chromosome Location	chr15:82618422-82621270
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:82619677-82619746	Spleen_OC	spleen:	n/a	n/a
2	EBF1	chr15:82618527-82618777	GM12878	blood:	n/a	n/a
3	TCF3	chr15:82618470-82618838	GM12878	blood:	n/a	chr15:82618600-82618613 chr15:82618598-82618608

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM154B-1	chr15:82620233-82620571	NONHSAT047777

Variant related genes	Relation type
ADAMTS7P1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62010094	chr15:82618652-82618653	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs62010097	chr15:82619739-82619740	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs563554721	chr15:82620261-82620262	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs141755317	chr15:82620272-82620273	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs545792395	chr15:82620303-82620304	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs56691927	chr15:82620307-82620308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs62010099	chr15:82620354-82620355	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs547482733	chr15:82620365-82620366	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs58875180	chr15:82620453-82620454	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs59843064	chr15:82620454-82620455	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs567461644	chr15:82620505-82620506	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs530215106	chr15:82620509-82620510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs373405493	chr15:82620539-82620540	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs549988749	chr15:82620546-82620547	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs570171348	chr15:82620557-82620558	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs539279830	chr15:82620562-82620563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs558991341	chr15:82620563-82620564	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs565666934	chr15:82620565-82620566	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Congenital diaphragmatic hernia	20921022	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
renal disease	17924346	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Williams Syndrome	20824207	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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