Variant report

Variant	esv3339313
Chromosome Location	chr4:159026327-159029075
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:175 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559460210	chr4:159026327-159026328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs528482348	chr4:159026328-159026329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs150319691	chr4:159026350-159026351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs368701003	chr4:159026351-159026352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs35508368	chr4:159026363-159026364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200518190	chr4:159026374-159026375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34236656	chr4:159026375-159026376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs397742923	chr4:159026385-159026386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9995402	chr4:159026414-159026415	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs35286629	chr4:159026431-159026432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs565067337	chr4:159026432-159026433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs141751946	chr4:159026455-159026456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs545371948	chr4:159026456-159026457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs539779301	chr4:159026469-159026470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550854839	chr4:159026477-159026478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368481790	chr4:159026510-159026511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189614409	chr4:159026533-159026534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs35814358	chr4:159026622-159026623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs193051075	chr4:159026660-159026661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs547284184	chr4:159026683-159026684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs565662951	chr4:159026719-159026720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs185276851	chr4:159026724-159026725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs34237515	chr4:159026759-159026760	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs576900109	chr4:159026792-159026793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs145839760	chr4:159026795-159026796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs12511713	chr4:159026828-159026829	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs556834965	chr4:159026829-159026830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs547235812	chr4:159026855-159026856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543551412	chr4:159026911-159026912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs553267952	chr4:159026925-159026926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs572881448	chr4:159026930-159026931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs114980874	chr4:159026948-159026949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs75957319	chr4:159027014-159027015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs28547578	chr4:159027046-159027047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs115937326	chr4:159027050-159027051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71587448	chr4:159027061-159027062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374736908	chr4:159027062-159027063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201054233	chr4:159027076-159027077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62337011	chr4:159027077-159027078	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs190569655	chr4:159027078-159027079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562402108	chr4:159027082-159027083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs36128489	chr4:159027083-159027084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs530349466	chr4:159027084-159027085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548164246	chr4:159027114-159027115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs71587449	chr4:159027115-159027116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570563649	chr4:159027116-159027117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs182008671	chr4:159027126-159027127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185054422	chr4:159027145-159027146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200620233	chr4:159027148-159027149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs377511329	chr4:159027162-159027163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	20409316	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Autism	20841430	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159018600-159030000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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