Variant report

Variant	esv3339645
Chromosome Location	chr7:58031010-58042608
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:27812380..27812881-chr7:58041614..58042119,2	MCF-7	breast:

Extended variants
information (count: 1551 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:1551 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559661530	chr7:58031024-58031025	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs374406717	chr7:58031026-58031027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs201322603	chr7:58031032-58031033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs199631315	chr7:58031038-58031039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs2340129	chr7:58031040-58031041	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs371644982	chr7:58031041-58031042	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs563570368	chr7:58031044-58031045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs529978796	chr7:58031052-58031053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs201546444	chr7:58031053-58031054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs551321813	chr7:58031063-58031064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs567246453	chr7:58031076-58031077	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs528140517	chr7:58031078-58031079	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs569136621	chr7:58031081-58031082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs546287025	chr7:58031083-58031084	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs199770557	chr7:58031085-58031086	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs200481152	chr7:58031117-58031118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs113166711	chr7:58031126-58031127	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs186739290	chr7:58031144-58031145	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs557269547	chr7:58031145-58031146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs537198293	chr7:58031159-58031160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs113724063	chr7:58031163-58031164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs200980458	chr7:58031182-58031183	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs536439340	chr7:58031211-58031212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs554760167	chr7:58031218-58031219	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs574063757	chr7:58031224-58031225	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs367986775	chr7:58031227-58031228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs541482690	chr7:58031229-58031230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs553115759	chr7:58031232-58031233	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs192325501	chr7:58031236-58031237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs185687983	chr7:58031244-58031245	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs143671945	chr7:58031248-58031249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs368438525	chr7:58031258-58031259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs138774484	chr7:58031277-58031278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs201638084	chr7:58031279-58031280	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs566006249	chr7:58031301-58031302	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs528188463	chr7:58031303-58031304	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs149380667	chr7:58031317-58031318	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs571181026	chr7:58031339-58031340	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs144668395	chr7:58031353-58031354	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs550931582	chr7:58031359-58031360	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs142334664	chr7:58031372-58031373	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs141087650	chr7:58031373-58031374	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs137970852	chr7:58031376-58031377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs150782316	chr7:58031379-58031380	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs144219595	chr7:58031382-58031383	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs140555960	chr7:58031387-58031388	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs138376804	chr7:58031390-58031391	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs145990806	chr7:58031393-58031394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs569168449	chr7:58031394-58031395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs149761333	chr7:58031398-58031399	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Wilms tumour	21544195	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
head and neck squamous cell carcinoma	17671120	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58026400-58036600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr7:58026400-58042800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr7:58026400-58043000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:58032200-58038400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr7:58032400-58032800	Active TSS	Aorta	Aorta
6	chr7:58032400-58043000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr7:58035200-58037000	ZNF genes & repeats	Liver	Liver
8	chr7:58037000-58039400	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr7:58037800-58040000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr7:58038800-58039200	Active TSS	Aorta	Aorta
11	chr7:58038800-58040000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:58040400-58040600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr7:58040400-58040800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
14	chr7:58040600-58042400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:58041400-58043000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
16	chr7:58041800-58042600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr7:58041800-58042800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr7:58042000-58042200	ZNF genes & repeats	NH-A	brain
19	chr7:58042000-58042600	ZNF genes & repeats	HUVEC	blood vessel
20	chr7:58042200-58042600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:58042400-58042600	ZNF genes & repeats	Brain Substantia Nigra	brain
22	chr7:58042400-58042800	ZNF genes & repeats	Colon Smooth Muscle	Colon

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