Variant report

Variant	esv3340048
Chromosome Location	chr11:65837001-65839549
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:539)
CpG islands
(count:427)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:539 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr11:65837178-65837719	GM12878	blood:	n/a	n/a
2	BACH1	chr11:65837420-65837880	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr11:65836882-65837136	H1-hESC	embryonic stem cell:	n/a	n/a
4	BCL3	chr11:65837164-65837986	GM12878	blood:	n/a	chr11:65837302-65837315
5	BCL3	chr11:65836667-65837492	A549	lung:	n/a	chr11:65837302-65837315
6	BCL3	chr11:65836494-65837558	A549	lung:	n/a	chr11:65837302-65837315
7	BCLAF1	chr11:65836969-65837873	GM12878	blood:	n/a	chr11:65837302-65837315
8	BHLHE40	chr11:65837661-65837884	K562	blood:	n/a	n/a
9	BHLHE40	chr11:65837450-65837880	GM12878	blood:	n/a	n/a
10	BHLHE40	chr11:65836449-65837033	GM12878	blood:	n/a	n/a
11	CCNT2	chr11:65837208-65838564	K562	blood:	n/a	n/a
12	CEBPB	chr11:65838572-65838872	K562	blood:	n/a	chr11:65838693-65838704
13	CEBPB	chr11:65838503-65838945	Hela-S3	cervix:	n/a	chr11:65838693-65838704
14	CEBPB	chr11:65838491-65838876	K562	blood:	n/a	chr11:65838693-65838704
15	CEBPB	chr11:65837233-65837326	H1-hESC	embryonic stem cell:	n/a	n/a
16	CEBPB	chr11:65838574-65838803	HepG2	liver:	n/a	chr11:65838693-65838704
17	CEBPB	chr11:65838610-65838896	A549	lung:	n/a	chr11:65838693-65838704
18	CEBPD	chr11:65837257-65837603	HepG2	liver:	n/a	n/a
19	CEBPD	chr11:65837639-65837944	HepG2	liver:	n/a	n/a
20	CHD1	chr11:65838849-65838949	GM12878	blood:	n/a	n/a
21	CHD1	chr11:65839168-65839217	GM12878	blood:	n/a	n/a
22	CHD1	chr11:65838563-65838629	GM12878	blood:	n/a	n/a
23	CHD1	chr11:65837824-65838085	GM12878	blood:	n/a	n/a
24	CHD2	chr11:65838208-65838226	Hela-S3	cervix:	n/a	n/a
25	CHD2	chr11:65837637-65837928	K562	blood:	n/a	n/a
26	CHD2	chr11:65837508-65837978	GM12878	blood:	n/a	n/a
27	CHD2	chr11:65837646-65837768	HepG2	liver:	n/a	n/a
28	CHD2	chr11:65837356-65837913	Hela-S3	cervix:	n/a	n/a
29	CHD2	chr11:65836506-65837093	GM12878	blood:	n/a	n/a
30	CHD2	chr11:65838801-65839051	Hela-S3	cervix:	n/a	n/a
31	CREB1	chr11:65836896-65838012	GM12878	blood:	n/a	n/a
32	CREB1	chr11:65837194-65838013	A549	lung:	n/a	n/a
33	CREB1	chr11:65838043-65838411	A549	lung:	n/a	n/a
34	CREB1	chr11:65836920-65838464	HepG2	liver:	n/a	n/a
35	CTCF	chr11:65837200-65837350	AG04450	lung:	n/a	n/a
36	CTCF	chr11:65836980-65837130	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr11:65836941-65837045	K562	blood:	n/a	n/a
38	CTCF	chr11:65837880-65838030	GM12874	blood:	n/a	n/a
39	CTCF	chr11:65837000-65837150	GM06990	blood:	n/a	n/a
40	CTCF	chr11:65836920-65837070	AG10803	skin:	n/a	n/a
41	CTCF	chr11:65836940-65837090	HCFaa	heart:	n/a	n/a
42	CTCF	chr11:65836860-65837010	WERI-Rb-1	eye:	n/a	n/a
43	CTCF	chr11:65837660-65837810	GM12866	blood:	n/a	n/a
44	CTCF	chr11:65836771-65837113	A549	lung:	n/a	n/a
45	CTCF	chr11:65837300-65837450	GM12873	blood:	n/a	n/a
46	CTCF	chr11:65836920-65837070	HCPEpiC	choroid plexus:	n/a	n/a
47	CTCF	chr11:65836920-65837070	HMEC	breast:	n/a	n/a
48	CTCF	chr11:65837000-65837150	SAEC	small airway:	n/a	n/a
49	CTCF	chr11:65836940-65837090	A549	lung:	n/a	n/a
50	CTCF	chr11:65836920-65837070	GM12864	blood:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:65838237-65838287	NH-A	brain:	n/a
2	chr11:65837194-65837244	PFSK-1	brain:	n/a
3	chr11:65838237-65838287	SKMC	muscle:	n/a
4	chr11:65837595-65837645	A549	lung:	n/a
5	chr11:65837996-65838046	PFSK-1	brain:	n/a
6	chr11:65839402-65839452	LNCaP	prostate:	n/a
7	chr11:65837255-65837305	HRPEpiC	eye:	n/a
8	chr11:65838237-65838287	MCF10A-Er-Src	breast:	n/a
9	chr11:65839402-65839452	AoSMC	blood vessel:	n/a
10	chr11:65837194-65837244	NHDF-neo	bronchial:	n/a
11	chr11:65838645-65838695	PFSK-1	brain:	n/a
12	chr11:65838645-65838695	ovcar-3	ovarian:	n/a
13	chr11:65838237-65838287	ProgFib	skin:	n/a
14	chr11:65837194-65837244	HIPEpiC	eye:	n/a
15	chr11:65837194-65837244	Caco-2	colon:	n/a
16	chr11:65838237-65838287	HL-60	blood:	n/a
17	chr11:65837194-65837244	BE2_C	brain:	n/a
18	chr11:65839402-65839452	ProgFib	skin:	n/a
19	chr11:65837595-65837645	Caco-2	colon:	n/a
20	chr11:65837595-65837645	HUVEC	blood vessel:	n/a
21	chr11:65838645-65838695	AG04449	skin:	fetal
22	chr11:65837595-65837645	U87	brain:	n/a
23	chr11:65839402-65839452	HUVEC	blood vessel:	n/a
24	chr11:65839402-65839452	NH-A	brain:	n/a
25	chr11:65837194-65837244	NB4	blood:	n/a
26	chr11:65837194-65837244	GM19239	blood:	n/a
27	chr11:65837595-65837645	HCF	heart:	n/a
28	chr11:65837595-65837645	GM06990	blood:	n/a
29	chr11:65838237-65838287	NHBE	bronchial:	n/a
30	chr11:65839402-65839452	NT2-D1	testis:	n/a
31	chr11:65838645-65838695	HepG2	liver:	n/a
32	chr11:65839402-65839452	PrEC	prostate:	n/a
33	chr11:65838237-65838287	SK-N-SH_RA	brain:	n/a
34	chr11:65838237-65838287	GM12892	blood:	n/a
35	chr11:65837595-65837645	SK-N-SH	brain:	n/a
36	chr11:65837996-65838046	HCF	heart:	n/a
37	chr11:65838237-65838287	AG04450	lung:	fetal
38	chr11:65838645-65838695	IMR90	lung:	fetal
39	chr11:65839402-65839452	HRE	kidney:	n/a
40	chr11:65839402-65839452	SK-N-SH_RA	brain:	n/a
41	chr11:65838645-65838695	SK-N-MC	brain:	n/a
42	chr11:65837255-65837305	HNPCEpiC	eye:	n/a
43	chr11:65839402-65839452	A549	lung:	n/a
44	chr11:65837194-65837244	Hela-S3	cervix:	n/a
45	chr11:65837996-65838046	HCPEpiC	choroid plexus:	n/a
46	chr11:65839402-65839452	AG10803	skin:	n/a
47	chr11:65837996-65838046	GM19239	blood:	n/a
48	chr11:65837996-65838046	PANC-1	pancreas:	n/a
49	chr11:65837255-65837305	K562	blood:	n/a
50	chr11:65838237-65838287	ECC-1	luminal epithelium:	n/a

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65837799..65839374-chr11:65839439..65841570,2	MCF-7	breast:
2	chr11:65812922..65815510-chr11:65837744..65839701,2	K562	blood:
3	chr11:65839190..65841660-chr11:65977914..65980146,2	K562	blood:
4	chr11:65779081..65782393-chr11:65836476..65839425,3	MCF-7	breast:
5	chr11:65826244..65833224-chr11:65834439..65839387,11	MCF-7	breast:
6	chr11:65654814..65656550-chr11:65837621..65839885,2	MCF-7	breast:
7	chr11:65836209..65839676-chr11:66023244..66028603,5	K562	blood:
8	chr11:65625072..65626937-chr11:65835477..65837832,2	K562	blood:
9	chr11:65638895..65641565-chr11:65834356..65837225,2	K562	blood:
10	chr11:65788482..65791914-chr11:65833749..65837289,3	MCF-7	breast:
11	chr11:65837683..65838307-chr6:26196783..26197662,2	Hela-S3	cervix:
12	chr11:65665582..65668888-chr11:65835107..65838015,3	K562	blood:
13	chr11:65816864..65823380-chr11:65832037..65840391,16	MCF-7	breast:
14	chr11:65836209..65839625-chr11:66023244..66027607,5	K562	blood:
15	chr11:65788387..65789947-chr11:65837601..65839297,2	K562	blood:
16	chr11:65623430..65625691-chr11:65837839..65839866,2	K562	blood:
17	chr11:65836782..65838328-chr20:49347114..49348947,2	MCF-7	breast:
18	chr11:65685063..65688035-chr11:65836071..65837888,2	MCF-7	breast:
19	chr11:65837641..65839546-chr11:66050688..66053288,2	K562	blood:
20	chr11:65836630..65840121-chr11:66032259..66035828,5	MCF-7	breast:
21	chr11:65835858..65838956-chr11:66027814..66030508,4	MCF-7	breast:
22	chr11:65768121..65772581-chr11:65835630..65838620,4	MCF-7	breast:
23	chr11:65656719..65659047-chr11:65835301..65837715,2	MCF-7	breast:
24	chr11:65654924..65661575-chr11:65833688..65838665,10	K562	blood:
25	chr11:65654924..65660442-chr11:65834310..65838665,6	K562	blood:
26	chr11:65837353..65839732-chr11:66024702..66027312,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255038	TF binding region
PACS1	TF binding region
ENSG00000255038	CpG island
PACS1	CpG island
ENSG00000197409	chromatin interactions
ENSG00000254855	chromatin interactions
ENSG00000175550	chromatin interactions
ENSG00000175229	chromatin interactions
ENSG00000174996	chromatin interactions
ENSG00000174851	chromatin interactions
ENSG00000175376	chromatin interactions
ENSG00000175602	chromatin interactions
ENSG00000175115	chromatin interactions
ENSG00000172638	chromatin interactions
ENSG00000172757	chromatin interactions
ENSG00000254461	chromatin interactions
ENSG00000172500	chromatin interactions
ENSG00000124171	chromatin interactions
ENSG00000175592	chromatin interactions
ENSG00000087365	chromatin interactions
ENSG00000254762	chromatin interactions
ENSG00000175315	chromatin interactions
ENSG00000175294	chromatin interactions
ENSG00000238752	chromatin interactions
ENSG00000175334	chromatin interactions
ENSG00000172732	chromatin interactions
ENSG00000175573	chromatin interactions

Extended variants
information (count: 66 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551852624	chr11:65837022-65837023	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
2	rs2277303	chr11:65837056-65837057	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
3	rs375956387	chr11:65837087-65837088	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
4	rs565799567	chr11:65837131-65837132	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
5	rs534683130	chr11:65837137-65837138	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
6	rs151185965	chr11:65837138-65837139	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
7	rs548554123	chr11:65837153-65837154	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
8	rs554448996	chr11:65837197-65837198	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
9	rs567859900	chr11:65837311-65837312	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
10	rs369034703	chr11:65837381-65837382	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
11	rs556827902	chr11:65837455-65837456	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
12	rs2254388	chr11:65837599-65837600	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs545408979	chr11:65837623-65837624	Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
14	rs2376231	chr11:65837679-65837680	Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
15	rs572241175	chr11:65837842-65837843	Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	23 gene(s)	Overlapped CNVs	n/a
16	rs149876307	chr11:65837928-65837929	Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	20 gene(s)	Overlapped CNVs	n/a
17	rs75352646	chr11:65838059-65838060	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
18	rs369233658	chr11:65838061-65838062	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
19	rs543611409	chr11:65838124-65838125	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
20	rs543210951	chr11:65838142-65838143	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
21	rs563612549	chr11:65838203-65838204	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	19 gene(s)	Overlapped CNVs	n/a
22	rs532276860	chr11:65838326-65838327	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	18 gene(s)	Overlapped CNVs	n/a
23	rs552228058	chr11:65838343-65838344	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
24	rs373934734	chr11:65838406-65838407	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
25	rs565673155	chr11:65838458-65838459	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
26	rs528244945	chr11:65838511-65838512	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
27	rs11823618	chr11:65838530-65838531	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
28	rs144912153	chr11:65838532-65838533	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
29	rs77867801	chr11:65838572-65838573	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	17 gene(s)	Overlapped CNVs	n/a
30	rs550079141	chr11:65838623-65838624	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
31	rs370587938	chr11:65838646-65838647	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
32	rs570356803	chr11:65838661-65838662	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	Overlapped CNVs	n/a
33	rs148632581	chr11:65838678-65838679	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
34	rs531940251	chr11:65838688-65838689	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
35	rs558568231	chr11:65838712-65838713	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
36	rs572104175	chr11:65838735-65838736	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
37	rs570964148	chr11:65838787-65838788	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
38	rs534653144	chr11:65838832-65838833	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
39	rs35526559	chr11:65838845-65838846	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
40	rs187871943	chr11:65838944-65838945	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
41	rs574802073	chr11:65838947-65838948	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
42	rs543622554	chr11:65838953-65838954	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	14 gene(s)	Overlapped CNVs	n/a
43	rs563314340	chr11:65838964-65838965	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
44	rs577101209	chr11:65838977-65838978	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
45	rs546119244	chr11:65838981-65838982	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
46	rs75191846	chr11:65838991-65838992	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
47	rs34538774	chr11:65839003-65839004	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
48	rs528105658	chr11:65839020-65839021	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
49	rs576764826	chr11:65839032-65839033	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
50	rs548177079	chr11:65839061-65839062	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:483 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65828200-65838000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:65835400-65837200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:65835400-65837200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:65835800-65837200	Weak transcription	Aorta	Aorta
5	chr11:65835800-65837200	Weak transcription	Ovary	ovary
6	chr11:65836000-65837200	Transcr. at gene 5' and 3'	A549	lung
7	chr11:65836000-65837400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:65836200-65837200	Flanking Active TSS	Fetal Heart	heart
9	chr11:65836200-65837400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr11:65836200-65837600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
11	chr11:65836400-65837200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:65836400-65837400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:65836400-65837600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:65836600-65837200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:65836600-65837200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr11:65836600-65837200	Flanking Active TSS	Colon Smooth Muscle	Colon
17	chr11:65836600-65837200	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr11:65836600-65837200	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr11:65836600-65837200	Flanking Active TSS	HSMMtube	muscle
20	chr11:65836600-65837400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:65836600-65837400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:65836600-65837400	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr11:65836600-65837400	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr11:65836600-65837400	Flanking Active TSS	Brain Hippocampus Middle	brain
25	chr11:65836600-65837400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr11:65836600-65837400	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr11:65836600-65837600	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr11:65836600-65837600	Flanking Active TSS	Colonic Mucosa	Colon
29	chr11:65836800-65837200	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:65836800-65837200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr11:65836800-65837200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr11:65836800-65837200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:65836800-65837200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:65836800-65837200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:65836800-65837200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr11:65836800-65837200	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
37	chr11:65836800-65837200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr11:65836800-65837200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:65836800-65837200	Flanking Active TSS	Brain Cingulate Gyrus	brain
40	chr11:65836800-65837200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:65836800-65837200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr11:65836800-65837200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
43	chr11:65836800-65837200	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
44	chr11:65836800-65837200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr11:65836800-65837200	Flanking Active TSS	Right Ventricle	heart
46	chr11:65836800-65837200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
47	chr11:65836800-65837200	Flanking Active TSS	Spleen	Spleen
48	chr11:65836800-65837200	Transcr. at gene 5' and 3'	Dnd41	blood
49	chr11:65836800-65837200	Flanking Active TSS	HSMM	muscle
50	chr11:65836800-65837400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links