Variant report
Variant | esv3340202 |
---|---|
Chromosome Location | chr4:187325058-187329656 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:187327492..187329160-chr4:187332412..187335274,2 | K562 | blood: |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs533022446 | chr4:187325440-187325441 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs559985238 | chr4:187325476-187325477 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs550716899 | chr4:187325518-187325519 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs11417967 | chr4:187325556-187325557 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs369548887 | chr4:187325557-187325558 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs10611063 | chr4:187325617-187325618 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs10611105 | chr4:187325620-187325621 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs200817029 | chr4:187325631-187325632 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs117889812 | chr4:187325632-187325633 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs142850092 | chr4:187325641-187325642 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs188377249 | chr4:187325646-187325647 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs530392731 | chr4:187325702-187325703 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs181204447 | chr4:187325705-187325706 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs150496813 | chr4:187325708-187325709 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs566978216 | chr4:187325732-187325733 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs146008720 | chr4:187325755-187325756 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs115832271 | chr4:187325786-187325787 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs115227613 | chr4:187325815-187325816 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs538473637 | chr4:187325819-187325820 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs72712665 | chr4:187325841-187325842 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
21 | rs575507755 | chr4:187325864-187325865 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs537004359 | chr4:187325875-187325876 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs557327333 | chr4:187325930-187325931 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs574128038 | chr4:187326041-187326042 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs138658497 | chr4:187326047-187326048 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs36107986 | chr4:187326137-187326138 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs75190642 | chr4:187326139-187326140 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs573446447 | chr4:187326143-187326144 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs113138520 | chr4:187326218-187326219 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
30 | rs539121494 | chr4:187326260-187326261 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
31 | rs372765977 | chr4:187326265-187326266 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
32 | rs150798674 | chr4:187326280-187326281 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
33 | rs114229587 | chr4:187326294-187326295 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
34 | rs567269260 | chr4:187326326-187326327 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
35 | rs139177920 | chr4:187326330-187326331 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
36 | rs116647573 | chr4:187326346-187326347 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
37 | rs546265631 | chr4:187326381-187326382 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
38 | rs76587087 | chr4:187326405-187326406 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
39 | rs552358601 | chr4:187326435-187326436 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
40 | rs569009764 | chr4:187326446-187326447 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
41 | rs538140505 | chr4:187326457-187326458 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
42 | rs370992912 | chr4:187326484-187326485 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
43 | rs539313017 | chr4:187326577-187326578 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
44 | rs79691272 | chr4:187326615-187326616 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
45 | rs185748663 | chr4:187326626-187326627 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
46 | rs34103971 | chr4:187326672-187326673 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
47 | rs191655834 | chr4:187326719-187326720 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
48 | rs112546237 | chr4:187326729-187326730 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
49 | rs2044865 | chr4:187326738-187326739 | Weak transcription Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs545227169 | chr4:187326747-187326748 | Weak transcription Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
4q-syndrome | 17576883 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Muscular dystrophy | 21149563 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cervical cancer | 21062161 | CNVD |
Breast cancer | 16608533 | CNVD |
Wilms tumour | 21544195 | CNVD |
Lung cancer | 18438408 | CNVD |
Cancer | 22429812 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Breast cancer | 16272173 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Breast cancer | 21785460 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Breast cancer | 21633010 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Cancer | 20581869 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
abnormal development | 18461090 | CNVD |
Neuroblastoma | 16790693 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Facioscapulohumeral muscular dystrophy | 21829175 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Autism | 18414403 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Cancer | 20164920 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 20409316 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Schizophrenia | 21399695 | CNVD |
Developmental delay | 22127048 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Cervical cancer | 21063398 | CNVD |
Breast cancer | 22522925 | CNVD |
Melanoma | 20877625 | CNVD |
Glioma | 20126413 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:187325400-187326200 | Enhancers | A549 | lung |
2 | chr4:187325600-187326200 | Enhancers | Fetal Kidney | kidney |
3 | chr4:187325800-187326000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
4 | chr4:187325800-187326000 | Enhancers | Gastric | stomach |
5 | chr4:187325800-187326200 | Enhancers | H1 Cell Line | embryonic stem cell |
6 | chr4:187325800-187326200 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
7 | chr4:187326000-187327000 | Weak transcription | Gastric | stomach |
8 | chr4:187326000-187329200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
9 | chr4:187326200-187326800 | Active TSS | A549 | lung |
10 | chr4:187326200-187327200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
11 | chr4:187326800-187327400 | Enhancers | A549 | lung |
12 | chr4:187327000-187327200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
13 | chr4:187327000-187327400 | Enhancers | Fetal Lung | lung |
14 | chr4:187327000-187327600 | ZNF genes & repeats | Gastric | stomach |
15 | chr4:187327000-187327600 | Enhancers | Pancreas | Pancrea |
16 | chr4:187327200-187327400 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
17 | chr4:187327200-187327600 | Active TSS | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
18 | chr4:187327200-187327600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |