Variant report

Variant	esv3340441
Chromosome Location	chr9:16906902-16908975
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:140 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10756837	chr9:16906904-16906905	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs189432824	chr9:16906917-16906918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540495454	chr9:16906943-16906944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182258162	chr9:16906944-16906945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs573854995	chr9:16906993-16906994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs184375102	chr9:16907017-16907018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200502303	chr9:16907035-16907036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369148409	chr9:16907036-16907037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144498137	chr9:16907041-16907042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs533505077	chr9:16907064-16907065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs113719473	chr9:16907091-16907092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs551466807	chr9:16907119-16907120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs111418452	chr9:16907124-16907125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs371286187	chr9:16907135-16907136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575479876	chr9:16907139-16907140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs75046824	chr9:16907141-16907142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs370710426	chr9:16907145-16907146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs10810663	chr9:16907149-16907150	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs115029795	chr9:16907181-16907182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs79271589	chr9:16907232-16907233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs57198485	chr9:16907239-16907240	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs539556063	chr9:16907243-16907244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs561508133	chr9:16907245-16907246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs557588438	chr9:16907258-16907259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112367492	chr9:16907313-16907314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs181163239	chr9:16907347-16907348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs573506445	chr9:16907358-16907359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs147853695	chr9:16907385-16907386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562429706	chr9:16907412-16907413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544089162	chr9:16907415-16907416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs141304021	chr9:16907425-16907426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185519896	chr9:16907432-16907433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556748459	chr9:16907442-16907443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs578016209	chr9:16907443-16907444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551462030	chr9:16907469-16907470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545459006	chr9:16907488-16907489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs560401198	chr9:16907509-16907510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs527647452	chr9:16907529-16907530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs543049775	chr9:16907546-16907547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113780397	chr9:16907584-16907585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs9697099	chr9:16907621-16907622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190321642	chr9:16907623-16907624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs74879983	chr9:16907645-16907646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181552334	chr9:16907646-16907647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs74367130	chr9:16907649-16907650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs111637410	chr9:16907650-16907651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567812855	chr9:16907665-16907666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs186016051	chr9:16907671-16907672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs76718132	chr9:16907675-16907676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs183993950	chr9:16907676-16907677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21611746	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16902000-16914800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:16908200-16908600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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