Variant report
| Variant | esv3340469 |
|---|---|
| Chromosome Location | chrX:110226707-110226783 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs34616270 | chrX:110226708-110226709 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs57629808 | chrX:110226720-110226721 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs201968065 | chrX:110226721-110226722 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs200267819 | chrX:110226722-110226723 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs372672428 | chrX:110226723-110226724 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs200062259 | chrX:110226750-110226751 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs376905488 | chrX:110226754-110226755 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs371203251 | chrX:110226755-110226756 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs201440744 | chrX:110226756-110226757 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs373853781 | chrX:110226757-110226758 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs57876215 | chrX:110226758-110226759 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs66738578 | chrX:110226767-110226768 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs397732940 | chrX:110226776-110226777 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:45)
| Disease | PMID | Source |
|---|---|---|
| Neuroblastoma | 18923191 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Schizophrenia | 23904455 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| infertile | 22614455 | CNVD |
| Autism | 22495311 | CNVD |
| Cancer | 20581869 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Seminomas | 18059402 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Cancer | 22429812 | CNVD |
| Cancer | 16751803 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Cerebellar hypoplasia | 21569638 | CNVD |
| X-linked lissencephaly | 21569638 | CNVD |
| Pelizaeus-Merzbacher disease | 18923514 | CNVD |
| Pelizaeus-Merzbacher disease | 22241247 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Pelizaeus-Merzbacher disease | 22470819 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| Astrocytoma | 22246337 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| X-linked lissencephaly | 21572526 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chrX:110222800-110227200 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
