Variant report

Variant	esv3340547
Chromosome Location	chr10:117889765-117890247
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562723312	chr10:117889810-117889811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533295051	chr10:117889833-117889834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551450597	chr10:117889840-117889841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560545251	chr10:117889851-117889852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142736041	chr10:117889931-117889932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs12776813	chr10:117889939-117889940	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs74897899	chr10:117889940-117889941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs144502782	chr10:117889942-117889943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs549890029	chr10:117889955-117889956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550028410	chr10:117889963-117889964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs73368483	chr10:117889974-117889975	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs148129177	chr10:117890025-117890026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553541056	chr10:117890054-117890055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111952404	chr10:117890065-117890066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs10885859	chr10:117890127-117890128	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs111334348	chr10:117890162-117890163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs539998401	chr10:117890168-117890169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189750353	chr10:117890204-117890205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs28362104	chr10:117890219-117890220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs28666637	chr10:117890225-117890226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562779819	chr10:117890235-117890236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117880400-117892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:117884800-117892800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:117885200-117892000	Weak transcription	Fetal Stomach	stomach
4	chr10:117885200-117896400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:117886000-117892000	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:117886200-117891600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:117887200-117892200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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