Variant report

Variant	esv3340685
Chromosome Location	chr8:78830822-78833370
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564371493	chr8:78830879-78830880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs34267800	chr8:78830899-78830900	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs566442109	chr8:78830911-78830912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs561664722	chr8:78830933-78830934	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs75304548	chr8:78830937-78830938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs547454857	chr8:78830972-78830973	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs565667940	chr8:78830994-78830995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs377501709	chr8:78831016-78831017	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs72671267	chr8:78831055-78831056	Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs187251809	chr8:78831152-78831153	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs368167396	chr8:78831188-78831189	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs570760941	chr8:78831236-78831237	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs60642402	chr8:78831243-78831244	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs556478717	chr8:78831246-78831247	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs568097912	chr8:78831306-78831307	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs535483882	chr8:78831318-78831319	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs372949316	chr8:78831347-78831348	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs142628544	chr8:78831360-78831361	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs73245814	chr8:78831368-78831369	Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs539580096	chr8:78831536-78831537	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs557672007	chr8:78831558-78831559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs576352938	chr8:78831582-78831583	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs529563974	chr8:78833021-78833022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs548115602	chr8:78833118-78833119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs188893637	chr8:78833137-78833138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs539857498	chr8:78833172-78833173	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs551884722	chr8:78833183-78833184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs570186720	chr8:78833213-78833214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs578204543	chr8:78833216-78833217	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs147930187	chr8:78833231-78833232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs557718956	chr8:78833232-78833233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs141720205	chr8:78833242-78833243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs370633403	chr8:78833244-78833245	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs374336776	chr8:78833262-78833263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs555894646	chr8:78833281-78833282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs143504906	chr8:78833311-78833312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs148002349	chr8:78833312-78833313	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs55937668	chr8:78833333-78833334	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
Sezary syndrome	18413736	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Colorectal cancer	19455253	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78830800-78831000	Enhancers	Adipose Nuclei	Adipose
2	chr8:78831000-78831400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:78831000-78831400	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr8:78831000-78831600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:78831200-78831400	ZNF genes & repeats	Spleen	Spleen
6	chr8:78831200-78831600	Enhancers	Hela-S3	cervix
7	chr8:78833000-78833400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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