Variant report

Variant	esv3342133
Chromosome Location	chr5:98423365-98423687
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371090284	chr5:98423384-98423385	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs7723083	chr5:98423396-98423397	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs192410461	chr5:98423413-98423414	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs552884371	chr5:98423414-98423415	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs577719494	chr5:98423426-98423427	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs7711104	chr5:98423446-98423447	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs80355603	chr5:98423450-98423451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs575431633	chr5:98423467-98423468	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs542620595	chr5:98423471-98423472	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs560899432	chr5:98423489-98423490	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs183834854	chr5:98423491-98423492	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs540966065	chr5:98423499-98423500	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565444477	chr5:98423519-98423520	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs532701104	chr5:98423559-98423560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs564659157	chr5:98423562-98423563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs550912163	chr5:98423597-98423598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs568984246	chr5:98423622-98423623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs188995372	chr5:98423626-98423627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs10056306	chr5:98423627-98423628	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs17166635	chr5:98423653-98423654	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98414600-98423600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98423000-98423400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:98423400-98425200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:98423600-98424200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links