Variant report

Variant	esv3343168
Chromosome Location	chr16:72111500-72128436
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:748)
CpG islands
(count:1284)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:748 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:72117697-72118127	HepG2	liver:	n/a	n/a
2	ARID3A	chr16:72116270-72116523	HepG2	liver:	n/a	n/a
3	ARID3A	chr16:72127354-72127797	K562	blood:	n/a	n/a
4	ARID3A	chr16:72126520-72127967	HepG2	liver:	n/a	n/a
5	ATF1	chr16:72127376-72128012	K562	blood:	n/a	n/a
6	ATF2	chr16:72127303-72127968	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr16:72127450-72127952	GM12878	blood:	n/a	n/a
8	ATF2	chr16:72127147-72127968	GM12878	blood:	n/a	n/a
9	ATF3	chr16:72127419-72127803	K562	blood:	n/a	n/a
10	BCL3	chr16:72127280-72128090	A549	lung:	n/a	chr16:72127343-72127351
11	BCL3	chr16:72127232-72128062	A549	lung:	n/a	chr16:72127343-72127351
12	BCLAF1	chr16:72127128-72127951	GM12878	blood:	n/a	chr16:72127343-72127351
13	BCLAF1	chr16:72127182-72128146	GM12878	blood:	n/a	chr16:72127343-72127351
14	BHLHE40	chr16:72127158-72127875	K562	blood:	n/a	n/a
15	BHLHE40	chr16:72128101-72128196	K562	blood:	n/a	n/a
16	BHLHE40	chr16:72127293-72127984	GM12878	blood:	n/a	n/a
17	BHLHE40	chr16:72126835-72126986	GM12878	blood:	n/a	n/a
18	BRCA1	chr16:72127208-72127411	HepG2	liver:	n/a	n/a
19	BRCA1	chr16:72127629-72128067	HepG2	liver:	n/a	n/a
20	BRCA1	chr16:72127623-72127912	GM12878	blood:	n/a	n/a
21	BRCA1	chr16:72127388-72127968	Hela-S3	cervix:	n/a	n/a
22	BRCA1	chr16:72118060-72118078	GM12878	blood:	n/a	n/a
23	CBX3	chr16:72118343-72118710	K562	blood:	n/a	n/a
24	CBX3	chr16:72127470-72127878	K562	blood:	n/a	n/a
25	CBX3	chr16:72118288-72118762	K562	blood:	n/a	n/a
26	CBX3	chr16:72127242-72127945	K562	blood:	n/a	n/a
27	CCNT2	chr16:72127408-72127976	K562	blood:	n/a	n/a
28	CEBPB	chr16:72117677-72118233	HepG2	liver:	n/a	chr16:72118069-72118080
29	CEBPB	chr16:72127219-72128007	GM12878	blood:	n/a	n/a
30	CEBPB	chr16:72117900-72118147	A549	lung:	n/a	chr16:72118069-72118080
31	CEBPB	chr16:72117940-72118170	HepG2	liver:	n/a	chr16:72118069-72118080
32	CEBPB	chr16:72117649-72118254	HepG2	liver:	n/a	chr16:72118069-72118080
33	CEBPB	chr16:72117925-72118194	H1-hESC	embryonic stem cell:	n/a	chr16:72118069-72118080
34	CEBPB	chr16:72125162-72125522	HepG2	liver:	n/a	n/a
35	CEBPB	chr16:72128181-72128308	K562	blood:	n/a	n/a
36	CEBPB	chr16:72117915-72118203	K562	blood:	n/a	chr16:72118069-72118080
37	CEBPB	chr16:72117912-72118199	IMR90	lung:	n/a	chr16:72118069-72118080
38	CEBPB	chr16:72127291-72127935	Hela-S3	cervix:	n/a	n/a
39	CEBPD	chr16:72127307-72128028	K562	blood:	n/a	n/a
40	CEBPD	chr16:72127203-72127899	HepG2	liver:	n/a	n/a
41	CEBPZ	chr16:72127588-72127821	HepG2	liver:	n/a	n/a
42	CHD1	chr16:72127124-72128058	GM12878	blood:	n/a	n/a
43	CHD1	chr16:72127819-72128193	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD2	chr16:72127069-72128203	GM12878	blood:	n/a	n/a
45	CHD2	chr16:72126868-72126913	K562	blood:	n/a	n/a
46	CHD2	chr16:72126842-72128038	Hela-S3	cervix:	n/a	n/a
47	CHD2	chr16:72127502-72127960	HepG2	liver:	n/a	n/a
48	CHD2	chr16:72127379-72128375	K562	blood:	n/a	n/a
49	CHD2	chr16:72127343-72127888	H1-hESC	embryonic stem cell:	n/a	n/a
50	CREB1	chr16:72127346-72128081	ECC-1	luminal epithelium:	n/a	n/a

(count:1284 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:72127223-72127273	PFSK-1	brain:	n/a
2	chr16:72127639-72127689	AG04450	lung:	fetal
3	chr16:72127738-72127788	ProgFib	skin:	n/a
4	chr16:72127223-72127273	PFSK-1	brain:	n/a
5	chr16:72127639-72127689	AG04450	lung:	fetal
6	chr16:72127738-72127788	ProgFib	skin:	n/a
7	chr16:72128225-72128275	IMR90	lung:	fetal
8	chr16:72123401-72123451	NHDF-neo	bronchial:	n/a
9	chr16:72127815-72127865	MCF-7	breast:	n/a
10	chr16:72127368-72127418	NB4	blood:	n/a
11	chr16:72127815-72127865	HRCEpiC	kidney:	n/a
12	chr16:72127223-72127273	AoSMC	blood vessel:	n/a
13	chr16:72126421-72126471	Jurkat	blood:	n/a
14	chr16:72126421-72126471	NB4	blood:	n/a
15	chr16:72127738-72127788	PFSK-1	brain:	n/a
16	chr16:72127456-72127506	PANC-1	pancreas:	n/a
17	chr16:72127900-72127950	CMK	blood:	n/a
18	chr16:72127518-72127568	GM19239	blood:	n/a
19	chr16:72128010-72128060	AoSMC	blood vessel:	n/a
20	chr16:72127419-72127469	HepG2	liver:	n/a
21	chr16:72128393-72128443	HNPCEpiC	eye:	n/a
22	chr16:72127368-72127418	CMK	blood:	n/a
23	chr16:72127884-72127934	HRCEpiC	kidney:	n/a
24	chr16:72127368-72127418	HEK293	kidney:	embryo
25	chr16:72118960-72119010	Jurkat	blood:	n/a
26	chr16:72127419-72127469	AoSMC	blood vessel:	n/a
27	chr16:72127900-72127950	ECC-1	luminal epithelium:	n/a
28	chr16:72127223-72127273	NB4	blood:	n/a
29	chr16:72127938-72127988	SK-N-SH_RA	brain:	n/a
30	chr16:72128010-72128060	HNPCEpiC	eye:	n/a
31	chr16:72127419-72127469	BE2_C	brain:	n/a
32	chr16:72127815-72127865	BE2_C	brain:	n/a
33	chr16:72127900-72127950	ovcar-3	ovarian:	n/a
34	chr16:72127243-72127293	T-47D	breast:	n/a
35	chr16:72127900-72127950	HL-60	blood:	n/a
36	chr16:72127900-72127950	AG09319	gingival:	n/a
37	chr16:72127485-72127535	SKMC	muscle:	n/a
38	chr16:72127884-72127934	AG04449	skin:	fetal
39	chr16:72128010-72128060	Hela-S3	cervix:	n/a
40	chr16:72127243-72127293	NH-A	brain:	n/a
41	chr16:72128063-72128113	HCF	heart:	n/a
42	chr16:72127456-72127506	PFSK-1	brain:	n/a
43	chr16:72127130-72127180	GM19239	blood:	n/a
44	chr16:72127368-72127418	PANC-1	pancreas:	n/a
45	chr16:72118960-72119010	MCF-7	breast:	n/a
46	chr16:72127368-72127418	SAEC	small airway:	n/a
47	chr16:72128393-72128443	HRCEpiC	kidney:	n/a
48	chr16:72127223-72127273	HAEpiC	amniotic membrane:	n/a
49	chr16:72127130-72127180	CMK	blood:	n/a
50	chr16:72127368-72127418	HAEpiC	amniotic membrane:	n/a

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72112301..72116395-chr16:72123516..72129801,9	K562	blood:
2	chr16:72083527..72085440-chr16:72125131..72126986,2	MCF-7	breast:
3	chr10:28821490..28822049-chr16:72127512..72128106,2	NB4	blood:
4	chr16:72127015..72130100-chr16:72137516..72139899,4	MCF-7	breast:
5	chr16:72114982..72116823-chr16:72117205..72120121,2	MCF-7	breast:
6	chr11:62358922..62359848-chr16:72127020..72128328,4	Hela-S3	cervix:
7	chr16:72087766..72090367-chr16:72125547..72128434,2	K562	blood:
8	chr16:72106851..72109339-chr16:72120928..72123034,2	K562	blood:
9	chr16:72111604..72113887-chr16:72117079..72119613,2	K562	blood:
10	chr16:72042306..72048206-chr16:72125753..72130155,8	MCF-7	breast:
11	chr16:72042016..72045516-chr16:72126835..72130601,4	K562	blood:
12	chr16:72127858..72128539-chr6:35227141..35228082,2	Hela-S3	cervix:
13	chr16:72117553..72119364-chr16:72127046..72129363,2	MCF-7	breast:
14	chr16:72127382..72128016-chr18:32621034..32621908,2	HCT-116	colon:
15	chr16:18812518..18813083-chr16:72127604..72128561,3	Hela-S3	cervix:
16	chr16:72127429..72128033-chr9:140135297..140136119,2	Hela-S3	cervix:
17	chr16:71879510..71881419-chr16:72127750..72129828,2	MCF-7	breast:
18	chr16:72107601..72110331-chr16:72118448..72121540,3	MCF-7	breast:
19	chr11:62609117..62609646-chr16:72127270..72127948,2	NB4	blood:
20	chr16:72099750..72107853-chr16:72126502..72131093,10	MCF-7	breast:
21	chr16:72126810..72127382-chr5:52284450..52285224,2	Hela-S3	cervix:
22	chr16:72088867..72091285-chr16:72125547..72127887,2	K562	blood:
23	chr16:72049013..72051278-chr16:72125940..72127742,2	MCF-7	breast:
24	chr16:72117692..72119513-chr16:72121450..72123144,2	K562	blood:
25	chr16:72113219..72116485-chr16:72126386..72129773,3	MCF-7	breast:
26	chr16:72117368..72119841-chr16:72123694..72126741,5	MCF-7	breast:
27	chr16:72117553..72119364-chr16:72127046..72129363,2	MCF-7	breast:
28	chr16:72041183..72043806-chr16:72118863..72121421,3	MCF-7	breast:
29	chr16:72105312..72108135-chr16:72111951..72113970,2	K562	blood:
30	chr16:72116413..72117961-chr16:72118032..72120784,2	K562	blood:
31	chr1:153963014..153963707-chr16:72127316..72128049,2	Hela-S3	cervix:
32	chr16:72127639..72128156-chr17:56736353..56736972,2	Hela-S3	cervix:
33	chr16:72040983..72044286-chr16:72126039..72129128,5	MCF-7	breast:
34	chr16:71840719..71844104-chr16:72124883..72128411,3	K562	blood:

No data

Variant related genes	Relation type
TXNL4B	TF binding region
ENSG00000260252	TF binding region
DHX38	TF binding region
TXNL4B	CpG island
ENSG00000260252	CpG island
DHX38	CpG island
ENSG00000170540	chromatin interactions
ENSG00000182149	chromatin interactions
ENSG00000140830	chromatin interactions
ENSG00000224470	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000260252	chromatin interactions
ENSG00000257017	chromatin interactions
ENSG00000095787	chromatin interactions
ENSG00000166974	chromatin interactions
ENSG00000149016	chromatin interactions
ENSG00000261701	chromatin interactions
ENSG00000140829	chromatin interactions
ENSG00000177954	chromatin interactions
ENSG00000102967	chromatin interactions
ENSG00000260342	chromatin interactions
ENSG00000188229	chromatin interactions
ENSG00000065029	chromatin interactions
ENSG00000164171	chromatin interactions
ENSG00000166747	chromatin interactions
ENSG00000254635	chromatin interactions
ENSG00000255508	chromatin interactions

Extended variants
information (count: 797 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:797 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75557878	chr16:72111503-72111504	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs382695	chr16:72111510-72111511	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs2854952	chr16:72111537-72111538	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs545871237	chr16:72111548-72111549	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs564274915	chr16:72111574-72111575	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs531594298	chr16:72111624-72111625	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs116048006	chr16:72111656-72111657	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs138581010	chr16:72111676-72111677	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs141687334	chr16:72111721-72111722	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs145350407	chr16:72111742-72111743	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs566117036	chr16:72111768-72111769	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs540069889	chr16:72111774-72111775	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs181998238	chr16:72111775-72111776	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs569817004	chr16:72111785-72111786	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs537148824	chr16:72111805-72111806	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs138016528	chr16:72111834-72111835	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs573598977	chr16:72111847-72111848	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs573016138	chr16:72111876-72111877	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs534586329	chr16:72111883-72111884	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs553261502	chr16:72111888-72111889	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs541526246	chr16:72111891-72111892	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs561776402	chr16:72111895-72111896	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs372555442	chr16:72111899-72111900	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs149516139	chr16:72111920-72111921	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs550646197	chr16:72111995-72111996	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs2550038	chr16:72112013-72112014	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs72487947	chr16:72112019-72112020	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs8052025	chr16:72112052-72112053	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs561904732	chr16:72112079-72112080	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs186336219	chr16:72112096-72112097	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs541344322	chr16:72112115-72112116	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs560033221	chr16:72112117-72112118	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs533566585	chr16:72112159-72112160	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs372493526	chr16:72112179-72112180	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs551960220	chr16:72112185-72112186	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs570274545	chr16:72112245-72112246	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs57301770	chr16:72112252-72112253	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs148700160	chr16:72112268-72112269	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs567130360	chr16:72112294-72112295	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs79635135	chr16:72112326-72112327	Enhancers Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs377397473	chr16:72112371-72112372	Enhancers Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs552982880	chr16:72112405-72112406	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs2550037	chr16:72112421-72112422	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs538555540	chr16:72112429-72112430	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs147470081	chr16:72112440-72112441	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs55741258	chr16:72112480-72112481	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs575116775	chr16:72112490-72112491	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs145410339	chr16:72112522-72112523	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs190691375	chr16:72112523-72112524	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs573938498	chr16:72112553-72112554	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute myeloid leukemia	16864856	CNVD
Infiltrating lobular breast cancer	19191266	CNVD
T-cell lymphomas	19863542	CNVD
Hepatocellular carcinoma	16750200	CNVD
Medulloblastoma	16783165	CNVD
Neuroblastoma	21899760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
Melanoma	22183965	CNVD
Neuroblastoma	18923524	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:974 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72090200-72118400	Weak transcription	Lung	lung
2	chr16:72093200-72118000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:72093800-72118400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:72093800-72118400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:72095800-72111800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr16:72096800-72118200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr16:72097200-72118000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr16:72099200-72111800	Weak transcription	Primary T cells from cord blood	blood
9	chr16:72102800-72118400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:72104200-72117800	Weak transcription	Thymus	Thymus
11	chr16:72104800-72117800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr16:72106400-72118200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:72106600-72126400	Weak transcription	Small Intestine	intestine
14	chr16:72106800-72112000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr16:72106800-72117800	Weak transcription	Fetal Intestine Small	intestine
16	chr16:72106800-72118000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr16:72107000-72118200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr16:72107000-72118200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr16:72107600-72111600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr16:72107600-72117800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:72108000-72118000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr16:72108000-72118000	Weak transcription	Psoas Muscle	Psoas
23	chr16:72108000-72126400	Weak transcription	Fetal Heart	heart
24	chr16:72108200-72118000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:72108200-72118000	Weak transcription	Adipose Nuclei	Adipose
26	chr16:72108200-72118000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr16:72108200-72118400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr16:72108200-72118400	Weak transcription	Fetal Brain Female	brain
29	chr16:72108400-72111800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr16:72108400-72117800	Weak transcription	Primary B cells from cord blood	blood
31	chr16:72108400-72118400	Weak transcription	Brain Anterior Caudate	brain
32	chr16:72108400-72118400	Weak transcription	Fetal Muscle Leg	muscle
33	chr16:72108400-72118400	Weak transcription	Right Ventricle	heart
34	chr16:72108400-72118600	Weak transcription	Colon Smooth Muscle	Colon
35	chr16:72108400-72119000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr16:72108600-72111800	Weak transcription	Fetal Stomach	stomach
37	chr16:72108600-72117800	Weak transcription	Brain Angular Gyrus	brain
38	chr16:72108600-72118400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr16:72108600-72118400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr16:72108600-72118400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr16:72108800-72117800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr16:72108800-72118200	Weak transcription	Brain Substantia Nigra	brain
43	chr16:72108800-72118400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr16:72108800-72118600	Weak transcription	K562	blood
45	chr16:72108800-72118800	Weak transcription	Gastric	stomach
46	chr16:72109000-72117800	Weak transcription	Brain Hippocampus Middle	brain
47	chr16:72109000-72118200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr16:72109000-72118400	Weak transcription	Right Atrium	heart
49	chr16:72109000-72118600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr16:72109000-72122600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links