Variant report

Variant	esv3343170
Chromosome Location	chr19:24587013-24603813
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1699 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:1699 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372462817	chr19:24587037-24587038	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs79652743	chr19:24587042-24587043	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs570629777	chr19:24587045-24587046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs538037248	chr19:24587061-24587062	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs556746307	chr19:24587062-24587063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs111683483	chr19:24587069-24587070	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs200004626	chr19:24587078-24587079	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs568658330	chr19:24587094-24587095	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs190953217	chr19:24587095-24587096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs539594588	chr19:24587104-24587105	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs377200549	chr19:24587126-24587127	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs554179536	chr19:24587129-24587130	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs572024438	chr19:24587150-24587151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs545836102	chr19:24587152-24587153	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs8187221	chr19:24587162-24587163	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs62137765	chr19:24587174-24587175	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs200081405	chr19:24587180-24587181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs557851143	chr19:24587193-24587194	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs576239238	chr19:24587208-24587209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs543229225	chr19:24587228-24587229	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs561963260	chr19:24587229-24587230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs28842642	chr19:24587234-24587235	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs142477293	chr19:24587249-24587250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs113318132	chr19:24587265-24587266	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs529163054	chr19:24587271-24587272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs8187223	chr19:24587276-24587277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs552861968	chr19:24587280-24587281	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs559222756	chr19:24587285-24587286	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs527648087	chr19:24587296-24587297	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs552190246	chr19:24587310-24587311	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs570592563	chr19:24587315-24587316	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs531883390	chr19:24587332-24587333	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs550099893	chr19:24587335-24587336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs28829875	chr19:24587337-24587338	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs568600941	chr19:24587362-24587363	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs111419957	chr19:24587366-24587367	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs535675034	chr19:24587376-24587377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs554419452	chr19:24587377-24587378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs566391341	chr19:24587378-24587379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs539424947	chr19:24587380-24587381	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs373826452	chr19:24587395-24587396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs367671177	chr19:24587400-24587401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs576201092	chr19:24587403-24587404	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs8187333	chr19:24587413-24587414	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs112067494	chr19:24587415-24587416	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs543542855	chr19:24587437-24587438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs377248460	chr19:24587441-24587442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs573729497	chr19:24587458-24587459	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs368436455	chr19:24587468-24587469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs540887004	chr19:24587473-24587474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24582800-24588600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr19:24583000-24588600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr19:24583200-24588600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr19:24583400-24588600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:24584400-24588400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr19:24586400-24588200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr19:24586600-24587200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr19:24586600-24588200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:24586600-24588400	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr19:24586800-24587200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:24586800-24588600	ZNF genes & repeats	Liver	Liver
12	chr19:24586800-24588600	ZNF genes & repeats	HUVEC	blood vessel
13	chr19:24587600-24588400	Active TSS	Aorta	Aorta
14	chr19:24587600-24588400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:24587800-24588200	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr19:24587800-24588400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
17	chr19:24588200-24588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:24588600-24589000	Weak transcription	HUVEC	blood vessel
19	chr19:24593200-24594200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:24593600-24593800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr19:24593600-24596400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:24593800-24594200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr19:24593800-24594400	ZNF genes & repeats	Fetal Heart	heart
24	chr19:24594000-24594400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:24594000-24594600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr19:24594000-24597000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr19:24594200-24594400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
28	chr19:24594200-24594400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr19:24594200-24594400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
30	chr19:24594200-24594400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr19:24594200-24594400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:24594200-24594400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
33	chr19:24594200-24594400	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
34	chr19:24594200-24594400	ZNF genes & repeats	Brain Hippocampus Middle	brain
35	chr19:24594200-24594400	ZNF genes & repeats	Colonic Mucosa	Colon
36	chr19:24594200-24594400	ZNF genes & repeats	Colon Smooth Muscle	Colon
37	chr19:24594200-24594400	ZNF genes & repeats	Left Ventricle	heart
38	chr19:24594200-24594400	ZNF genes & repeats	Osteobl	bone
39	chr19:24594200-24594600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
40	chr19:24594200-24603400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr19:24595800-24602400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
42	chr19:24596000-24596400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr19:24597600-24603400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr19:24598200-24602800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr19:24601200-24601400	ZNF genes & repeats	HUVEC	blood vessel
46	chr19:24601200-24601600	ZNF genes & repeats	NH-A	brain
47	chr19:24601600-24608400	Weak transcription	NH-A	brain
48	chr19:24602000-24603400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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