Variant report

Variant	esv3343883
Chromosome Location	chr3:97917974-97928437
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:97922385-97922691	A549	lung:	n/a	chr3:97922556-97922567
2	CEBPB	chr3:97922385-97922736	HepG2	liver:	n/a	chr3:97922556-97922567
3	CTCF	chr3:97926264-97926295	LNCaP	prostate:	n/a	n/a
4	CTCF	chr3:97924040-97924190	GM12869	blood:	n/a	n/a
5	E2F4	chr3:97925082-97925346	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr3:97917973-97918166	MCF10A-Er-Src	breast:	n/a	chr3:97918034-97918044 chr3:97918036-97918043 chr3:97918034-97918043 chr3:97918035-97918044 chr3:97918035-97918043
7	FOS	chr3:97917927-97918220	MCF10A-Er-Src	breast:	n/a	chr3:97918034-97918044 chr3:97918036-97918043 chr3:97918034-97918043 chr3:97918035-97918044 chr3:97918035-97918043
8	FOS	chr3:97928334-97928502	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr3:97917894-97918220	MCF10A-Er-Src	breast:	n/a	chr3:97918034-97918044 chr3:97918036-97918043 chr3:97918034-97918043 chr3:97918035-97918044 chr3:97918035-97918043
10	FOS	chr3:97917976-97918221	MCF10A-Er-Src	breast:	n/a	chr3:97918034-97918044 chr3:97918036-97918043 chr3:97918034-97918043 chr3:97918035-97918044 chr3:97918035-97918043
11	JUN	chr3:97928145-97928303	HepG2	liver:	n/a	chr3:97928270-97928279 chr3:97928270-97928280 chr3:97928271-97928279 chr3:97928272-97928279 chr3:97928271-97928280
12	JUND	chr3:97917893-97918209	HepG2	liver:	n/a	chr3:97918034-97918044 chr3:97918036-97918043 chr3:97918034-97918043 chr3:97918035-97918044 chr3:97918033-97918044 chr3:97918035-97918043
13	JUND	chr3:97928111-97928434	HepG2	liver:	n/a	chr3:97928270-97928279 chr3:97928270-97928280 chr3:97928271-97928279 chr3:97928272-97928279 chr3:97928271-97928280 chr3:97928269-97928280
14	STAT3	chr3:97922297-97922656	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MINA-6	chr3:97923366-97923509	NONHSAT090787
2	lnc-MINA-6	chr3:97925331-97925450	NONHSAT090787

Variant related genes	Relation type
OR5H3P	TF binding region

Extended variants
information (count: 674 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:674 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532968566	chr3:97917988-97917989	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541742033	chr3:97918025-97918026	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs186422719	chr3:97918068-97918069	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572273081	chr3:97918079-97918080	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs138431203	chr3:97918107-97918108	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147043392	chr3:97918121-97918122	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201534545	chr3:97918122-97918123	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs3835149	chr3:97918123-97918124	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs67716134	chr3:97918124-97918125	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs563752283	chr3:97918136-97918137	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532856965	chr3:97918166-97918167	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543162278	chr3:97918168-97918169	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs114416729	chr3:97918191-97918192	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs58929043	chr3:97918222-97918223	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs548517166	chr3:97918233-97918234	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2291810	chr3:97918267-97918268	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs549347373	chr3:97918287-97918288	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs547802395	chr3:97918298-97918299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs569510959	chr3:97918300-97918301	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs377002246	chr3:97918313-97918314	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539917620	chr3:97918314-97918315	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556728146	chr3:97918337-97918338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs78537156	chr3:97918355-97918356	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370165632	chr3:97918370-97918371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539663298	chr3:97918392-97918393	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs191725448	chr3:97918404-97918405	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs572265054	chr3:97918448-97918449	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141879449	chr3:97918467-97918468	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs557330467	chr3:97918486-97918487	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs181506681	chr3:97918489-97918490	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs72927072	chr3:97918535-97918536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs566565237	chr3:97918547-97918548	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs563015155	chr3:97918559-97918560	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs9840421	chr3:97918560-97918561	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs542365844	chr3:97918572-97918573	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs377520899	chr3:97918603-97918604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562181852	chr3:97918606-97918607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs9879316	chr3:97918614-97918615	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs186441131	chr3:97918638-97918639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564457175	chr3:97918701-97918702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533330052	chr3:97918706-97918707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190713301	chr3:97918734-97918735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs554233661	chr3:97918742-97918743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs570086826	chr3:97918752-97918753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs535586900	chr3:97918781-97918782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs549153983	chr3:97918782-97918783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs565785766	chr3:97918825-97918826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs150227664	chr3:97918852-97918853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs12490755	chr3:97918853-97918854	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs62267814	chr3:97918860-97918861	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	21858020	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97917800-97918000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:97917800-97918000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:97917800-97918600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr3:97917800-97927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:97923600-97927600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:97926400-97926600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:97926600-97927600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:97927600-97927800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:97927600-97928200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:97927600-97928400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:97927600-97928800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:97927600-97928800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:97927800-97928200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:97928200-97928400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:97928200-97932200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:97928200-97936800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:97928400-97932200	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links