Variant report

Variant	esv3343986
Chromosome Location	chr15:53284440-53571936
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1034)
CpG islands
(count:305)
Chromatin interactive
region (count:50)
LncRNA
region (count:19)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1034 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:53326549-53327415	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:53489579-53489813	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:53544219-53544497	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:53511329-53511669	HepG2	liver:	n/a	n/a
5	ARID3A	chr15:53351448-53351770	HepG2	liver:	n/a	n/a
6	ATF1	chr15:53354867-53354946	K562	blood:	n/a	n/a
7	ATF3	chr15:53489617-53489757	K562	blood:	n/a	n/a
8	ATF3	chr15:53489579-53489767	HepG2	liver:	n/a	n/a
9	BACH1	chr15:53489560-53489867	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr15:53328542-53328551	K562	blood:	n/a	n/a
11	BACH1	chr15:53424601-53424612	K562	blood:	n/a	n/a
12	BHLHE40	chr15:53489612-53489839	K562	blood:	n/a	n/a
13	BHLHE40	chr15:53323711-53324088	HepG2	liver:	n/a	chr15:53323887-53323896 chr15:53323885-53323898 chr15:53323881-53323902 chr15:53323886-53323895 chr15:53323888-53323897 chr15:53323887-53323896
14	BRCA1	chr15:53489592-53489879	H1-hESC	embryonic stem cell:	n/a	n/a
15	CBX3	chr15:53364324-53364710	HCT-116	colon:	n/a	n/a
16	CEBPB	chr15:53339424-53339912	HepG2	liver:	n/a	chr15:53339587-53339598 chr15:53339557-53339568
17	CEBPB	chr15:53503165-53503496	K562	blood:	n/a	chr15:53503325-53503336 chr15:53503325-53503338 chr15:53503327-53503338 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503327-53503336 chr15:53503413-53503430 chr15:53503327-53503336
18	CEBPB	chr15:53525820-53525881	A549	lung:	n/a	n/a
19	CEBPB	chr15:53450483-53450832	MCF-7	breast:	n/a	chr15:53450666-53450677
20	CEBPB	chr15:53485429-53485725	MCF-7	breast:	n/a	n/a
21	CEBPB	chr15:53538602-53538763	HepG2	liver:	n/a	chr15:53538673-53538684
22	CEBPB	chr15:53450535-53450833	HepG2	liver:	n/a	chr15:53450666-53450677
23	CEBPB	chr15:53304104-53304364	A549	lung:	n/a	n/a
24	CEBPB	chr15:53557332-53557541	HepG2	liver:	n/a	n/a
25	CEBPB	chr15:53557444-53557474	K562	blood:	n/a	n/a
26	CEBPB	chr15:53394804-53394982	HepG2	liver:	n/a	chr15:53394870-53394881
27	CEBPB	chr15:53369787-53369848	A549	lung:	n/a	chr15:53369789-53369800 chr15:53369789-53369802
28	CEBPB	chr15:53503145-53503503	HepG2	liver:	n/a	chr15:53503325-53503336 chr15:53503325-53503338 chr15:53503327-53503338 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503327-53503336 chr15:53503413-53503430 chr15:53503327-53503336
29	CEBPB	chr15:53304081-53304382	HepG2	liver:	n/a	n/a
30	CEBPB	chr15:53435728-53436063	HepG2	liver:	n/a	chr15:53435895-53435906
31	CEBPB	chr15:53521196-53521465	A549	lung:	n/a	n/a
32	CEBPB	chr15:53503174-53503467	H1-hESC	embryonic stem cell:	n/a	chr15:53503325-53503336 chr15:53503325-53503338 chr15:53503327-53503338 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503327-53503336 chr15:53503413-53503430 chr15:53503327-53503336
33	CEBPB	chr15:53522799-53523080	A549	lung:	n/a	n/a
34	CEBPB	chr15:53450526-53450844	IMR90	lung:	n/a	chr15:53450666-53450677
35	CEBPB	chr15:53521210-53521444	HepG2	liver:	n/a	n/a
36	CEBPB	chr15:53458663-53458973	HepG2	liver:	n/a	chr15:53458827-53458838 chr15:53458826-53458839
37	CEBPB	chr15:53503160-53503504	IMR90	lung:	n/a	chr15:53503325-53503336 chr15:53503325-53503338 chr15:53503327-53503338 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503327-53503336 chr15:53503413-53503430 chr15:53503327-53503336
38	CEBPB	chr15:53435722-53436004	IMR90	lung:	n/a	chr15:53435895-53435906
39	CEBPB	chr15:53503165-53503513	A549	lung:	n/a	chr15:53503325-53503336 chr15:53503325-53503338 chr15:53503327-53503338 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503325-53503338 chr15:53503327-53503336 chr15:53503327-53503336 chr15:53503413-53503430 chr15:53503327-53503336
40	CEBPB	chr15:53423121-53423484	H1-hESC	embryonic stem cell:	n/a	n/a
41	CEBPB	chr15:53450508-53450855	A549	lung:	n/a	chr15:53450666-53450677
42	CEBPB	chr15:53435745-53436076	A549	lung:	n/a	chr15:53435895-53435906
43	CEBPB	chr15:53485501-53485749	HepG2	liver:	n/a	n/a
44	CEBPB	chr15:53488670-53488781	HepG2	liver:	n/a	chr15:53488697-53488708
45	CEBPB	chr15:53326974-53327446	HepG2	liver:	n/a	n/a
46	CEBPB	chr15:53456248-53456254	HepG2	liver:	n/a	n/a
47	CEBPB	chr15:53435690-53436040	MCF-7	breast:	n/a	chr15:53435895-53435906
48	CEBPD	chr15:53502129-53502484	K562	blood:	n/a	n/a
49	CHD1	chr15:53403047-53403168	H1-hESC	embryonic stem cell:	n/a	n/a
50	CHD2	chr15:53364346-53364644	Hela-S3	cervix:	n/a	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:53495286-53495336	GM06990	blood:	n/a
2	chr15:53489676-53489726	K562	blood:	n/a
3	chr15:53372675-53372725	NH-A	brain:	n/a
4	chr15:53422311-53422361	K562	blood:	n/a
5	chr15:53489676-53489726	BE2_C	brain:	n/a
6	chr15:53422311-53422361	GM12891	blood:	n/a
7	chr15:53372675-53372725	PANC-1	pancreas:	n/a
8	chr15:53422311-53422361	HPAEpiC	pulmonary alveolar:	n/a
9	chr15:53489676-53489726	AG10803	skin:	n/a
10	chr15:53489676-53489726	PANC-1	pancreas:	n/a
11	chr15:53495286-53495336	AG09309	skin:	n/a
12	chr15:53422311-53422361	NHBE	bronchial:	n/a
13	chr15:53422311-53422361	NB4	blood:	n/a
14	chr15:53489743-53489793	HRPEpiC	eye:	n/a
15	chr15:53372675-53372725	HPAEpiC	pulmonary alveolar:	n/a
16	chr15:53489676-53489726	Hela-S3	cervix:	n/a
17	chr15:53489676-53489726	U87	brain:	n/a
18	chr15:53489743-53489793	HL-60	blood:	n/a
19	chr15:53489743-53489793	HepG2	liver:	n/a
20	chr15:53489743-53489793	GM12891	blood:	n/a
21	chr15:53372675-53372725	Caco-2	colon:	n/a
22	chr15:53495286-53495336	HRPEpiC	eye:	n/a
23	chr15:53372675-53372725	NB4	blood:	n/a
24	chr15:53489676-53489726	IMR90	lung:	fetal
25	chr15:53372675-53372725	Jurkat	blood:	n/a
26	chr15:53422311-53422361	PrEC	prostate:	n/a
27	chr15:53489676-53489726	SK-N-SH_RA	brain:	n/a
28	chr15:53372675-53372725	AG09319	gingival:	n/a
29	chr15:53489743-53489793	HMEC	breast:	n/a
30	chr15:53372675-53372725	BJ	skin:	n/a
31	chr15:53489676-53489726	Hepatocyte	liver:	n/a
32	chr15:53489676-53489726	HRCEpiC	kidney:	n/a
33	chr15:53372675-53372725	SAEC	small airway:	n/a
34	chr15:53372675-53372725	HNPCEpiC	eye:	n/a
35	chr15:53489743-53489793	IMR90	lung:	fetal
36	chr15:53489676-53489726	NHBE	bronchial:	n/a
37	chr15:53489676-53489726	SKMC	muscle:	n/a
38	chr15:53489743-53489793	HCPEpiC	choroid plexus:	n/a
39	chr15:53489676-53489726	HCM	heart:	n/a
40	chr15:53495286-53495336	BJ	skin:	n/a
41	chr15:53489743-53489793	T-47D	breast:	n/a
42	chr15:53489676-53489726	PrEC	prostate:	n/a
43	chr15:53422311-53422361	HL-60	blood:	n/a
44	chr15:53495286-53495336	ECC-1	luminal epithelium:	n/a
45	chr15:53489676-53489726	GM06990	blood:	n/a
46	chr15:53495286-53495336	Caco-2	colon:	n/a
47	chr15:53489743-53489793	GM12892	blood:	n/a
48	chr15:53372675-53372725	HRPEpiC	eye:	n/a
49	chr15:53489743-53489793	Caco-2	colon:	n/a
50	chr15:53495286-53495336	AG04449	skin:	fetal

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:53364183..53365120-chr15:53374984..53375519,2	MCF-7	breast:
2	chr15:53563974..53565633-chr15:53567416..53569444,2	K562	blood:
3	chr15:53406863..53408730-chr15:53409145..53411501,2	MCF-7	breast:
4	chr15:53364183..53365120-chr15:53374984..53375519,2	MCF-7	breast:
5	chr15:53367799..53369631-chr15:53373514..53375161,2	MCF-7	breast:
6	chr15:53318089..53321018-chr15:53355252..53357036,2	MCF-7	breast:
7	chr15:53363971..53364789-chr15:53374593..53375688,3	MCF-7	breast:
8	chr15:53558558..53561044-chr15:53583643..53585319,2	MCF-7	breast:
9	chr15:53071938..53073712-chr15:53489196..53490158,23	MCF-7	breast:
10	chr15:53146326..53147158-chr15:53363981..53364531,2	MCF-7	breast:
11	chr15:53516800..53518385-chr15:53519039..53521500,2	MCF-7	breast:
12	chr15:53516800..53518385-chr15:53519039..53521500,2	MCF-7	breast:
13	chr15:53072495..53073554-chr15:53488826..53490260,10	MCF-7	breast:
14	chr15:53412161..53414398-chr15:53418222..53421112,2	MCF-7	breast:
15	chr15:53314666..53317363-chr15:53317996..53319589,2	MCF-7	breast:
16	chr15:53075751..53076563-chr15:53489418..53490178,2	K562	blood:
17	chr15:53436114..53438272-chr15:53440682..53443510,2	MCF-7	breast:
18	chr15:53438169..53441367-chr15:53443605..53446504,3	MCF-7	breast:
19	chr15:53299361..53301587-chr9:109632566..109635253,2	MCF-7	breast:
20	chr15:53072417..53073407-chr15:53544030..53544664,2	MCF-7	breast:
21	chr15:53489257..53489939-chr15:54008536..54009320,2	MCF-7	breast:
22	chr15:53363971..53364789-chr15:53374593..53375688,3	MCF-7	breast:
23	chr15:53398769..53401159-chr15:53403733..53405993,2	K562	blood:
24	chr15:53072484..53073442-chr15:53487582..53488375,2	MCF-7	breast:
25	chr15:53452155..53452718-chr15:53489026..53490168,3	MCF-7	breast:
26	chr15:53369383..53371838-chr15:53381998..53383881,2	K562	blood:
27	chr15:53398769..53401159-chr15:53403733..53405993,2	K562	blood:
28	chr15:53369383..53371838-chr15:53381998..53383881,2	K562	blood:
29	chr15:53364390..53366274-chr15:53368340..53370470,3	MCF-7	breast:
30	chr15:53563974..53565633-chr15:53567416..53569444,2	K562	blood:
31	chr15:53057671..53058606-chr15:53489106..53490153,8	MCF-7	breast:
32	chr15:53463040..53465970-chr15:53466273..53469129,2	MCF-7	breast:
33	chr15:53104829..53105653-chr15:53489336..53490188,3	MCF-7	breast:
34	chr15:53436114..53438272-chr15:53440682..53443510,2	MCF-7	breast:
35	chr15:53463040..53465970-chr15:53466273..53469129,2	MCF-7	breast:
36	chr1:147063109..147063671-chr15:53336684..53337320,2	MCF-7	breast:
37	chr15:53252599..53253221-chr15:53489181..53490104,2	MCF-7	breast:
38	chr15:53452155..53452718-chr15:53489026..53490168,3	MCF-7	breast:
39	chr15:53314666..53317363-chr15:53317996..53319589,2	MCF-7	breast:
40	chr15:53364390..53366274-chr15:53368340..53370470,3	MCF-7	breast:
41	chr15:53367799..53369631-chr15:53373514..53375161,2	MCF-7	breast:
42	chr15:53447164..53449219-chr15:53451381..53453427,2	K562	blood:
43	chr15:53412161..53414398-chr15:53418222..53421112,2	MCF-7	breast:
44	chr15:53447164..53449219-chr15:53451381..53453427,2	K562	blood:
45	chr15:53318089..53321018-chr15:53355252..53357036,2	MCF-7	breast:
46	chr15:53438169..53441367-chr15:53443605..53446504,3	MCF-7	breast:
47	chr15:53252240..53253636-chr15:53489235..53490173,5	MCF-7	breast:
48	chr15:53225655..53226319-chr15:53489107..53489777,2	MCF-7	breast:
49	chr15:53364212..53364797-chr15:53623796..53624629,2	MCF-7	breast:
50	chr15:53058063..53058597-chr15:53489598..53490133,2	MCF-7	breast:

(count:19 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UNC13C-7	chr15:53334546-53335833	NONHSAT043958
2	lnc-ONECUT1-3	chr15:53346270-53346297	NONHSAT043959
3	lnc-UNC13C-1	chr15:53421436-53421895	ENSG00000259237.1
4	lnc-UNC13C-6	chr15:53362262-53362447	NONHSAT043960
5	lnc-UNC13C-2	chr15:53375035-53375267	NONHSAT043961
6	lnc-ONECUT1-3	chr15:53343151-53343209	NONHSAT043959
7	lnc-ONECUT1-3	chr15:53344936-53345174	NONHSAT043959
8	lnc-UNC13C-2	chr15:53392927-53393040	XLOC_011259
9	lnc-ONECUT1-4	chr15:53397038-53397355	expReg_chr15_3758_-
10	lnc-UNC13C-2	chr15:53393714-53393924	NONHSAT043961
11	lnc-UNC13C-2	chr15:53375073-53375267	XLOC_011259
12	lnc-UNC13C-2	chr15:53375036-53375267	XLOC_011259
13	lnc-UNC13C-1	chr15:53410416-53410462	ENSG00000259237.1
14	lnc-UNC13C-1	chr15:53408562-53408655	ENSG00000259237.1
15	lnc-UNC13C-2	chr15:53392927-53393040	XLOC_011259
16	lnc-UNC13C-2	chr15:53393715-53393924	XLOC_011259
17	lnc-UNC13C-6	chr15:53360686-53360774	NONHSAT043960
18	lnc-UNC13C-2	chr15:53392926-53393040	NONHSAT043961
19	lnc-UNC13C-8	chr15:53485825-53486271	NONHSAT043957

No data

Variant related genes	Relation type
ENSG00000259237	TF binding region
ENSG00000259237	CpG island
ENSG00000169856	chromatin interactions
ENSG00000259237	chromatin interactions
DMTF1	miRNA target sites
RBM10	miRNA target sites
SMG1	miRNA target sites
PWP1	miRNA target sites
DMXL1	miRNA target sites

Extended variants
information (count: 5998 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:5998 , 50 per page) page: 1 2 3 4 5 6 7 ... 120

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371068101	chr15:53286049-53286050	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs554329277	chr15:53286052-53286053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs184047452	chr15:53286058-53286059	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs544913515	chr15:53286081-53286082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs201309290	chr15:53286122-53286123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs375711157	chr15:53286141-53286142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs139782028	chr15:53286207-53286208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs560192429	chr15:53286237-53286238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs527413045	chr15:53286243-53286244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs112481047	chr15:53286265-53286266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs372278821	chr15:53286335-53286336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs143035940	chr15:53286336-53286337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs548986728	chr15:53286352-53286353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs539832400	chr15:53286387-53286388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs553448685	chr15:53286405-53286406	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs573351784	chr15:53286467-53286468	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs75850901	chr15:53286487-53286488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs115118920	chr15:53286512-53286513	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs575816592	chr15:53286556-53286557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs544539230	chr15:53286558-53286559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs531355992	chr15:53286575-53286576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs75720990	chr15:53286614-53286615	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs551209028	chr15:53286630-53286631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs34869161	chr15:53286642-53286643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs564791968	chr15:53286688-53286689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533493999	chr15:53286696-53286697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs146128852	chr15:53286707-53286708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs537058724	chr15:53286735-53286736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs569460541	chr15:53286771-53286772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs60456892	chr15:53286782-53286783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs557027348	chr15:53286795-53286796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75655517	chr15:53286817-53286818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs187819850	chr15:53286821-53286822	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs559785035	chr15:53286839-53286840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs548290261	chr15:53286841-53286842	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs568118058	chr15:53286846-53286847	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs190035777	chr15:53286853-53286854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs73400044	chr15:53286906-53286907	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs570720119	chr15:53286908-53286909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs374561640	chr15:53286928-53286929	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs140110587	chr15:53286932-53286933	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs186637248	chr15:53286970-53286971	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs192717086	chr15:53286977-53286978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs184741800	chr15:53286987-53286988	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs188510118	chr15:53286988-53286989	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs186459745	chr15:53289240-53289241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs140255818	chr15:53289255-53289256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs564970689	chr15:53289257-53289258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs527744721	chr15:53289264-53289265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs191712416	chr15:53289266-53289267	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Melanoma	21949216	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Renal cell carcinoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:413 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53286000-53287000	Enhancers	Liver	Liver
2	chr15:53289200-53289400	Enhancers	Liver	Liver
3	chr15:53292200-53293800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:53292200-53293800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:53303200-53303400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:53303200-53304600	Enhancers	Liver	Liver
7	chr15:53321800-53322800	Enhancers	Liver	Liver
8	chr15:53322800-53323400	Flanking Active TSS	Liver	Liver
9	chr15:53322800-53326400	Enhancers	HepG2	liver
10	chr15:53323400-53326200	Enhancers	Liver	Liver
11	chr15:53326200-53326400	Flanking Active TSS	Liver	Liver
12	chr15:53326400-53326600	Enhancers	Liver	Liver
13	chr15:53326400-53327000	Flanking Active TSS	HepG2	liver
14	chr15:53326600-53326800	Flanking Active TSS	Liver	Liver
15	chr15:53326800-53327800	Enhancers	Liver	Liver
16	chr15:53327000-53327200	Enhancers	HepG2	liver
17	chr15:53327200-53327400	Flanking Active TSS	HepG2	liver
18	chr15:53327400-53328400	Enhancers	HepG2	liver
19	chr15:53327800-53328200	Flanking Active TSS	Liver	Liver
20	chr15:53328200-53330600	Enhancers	Liver	Liver
21	chr15:53328400-53329600	Weak transcription	HepG2	liver
22	chr15:53329600-53330400	Enhancers	HepG2	liver
23	chr15:53330400-53331200	Flanking Active TSS	HepG2	liver
24	chr15:53330600-53331000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:53337800-53339200	Enhancers	Liver	Liver
26	chr15:53338200-53338800	Enhancers	HepG2	liver
27	chr15:53349000-53349400	Enhancers	Liver	Liver
28	chr15:53349400-53350800	Weak transcription	Liver	Liver
29	chr15:53350800-53351200	Enhancers	Liver	Liver
30	chr15:53351200-53352400	Flanking Active TSS	Liver	Liver
31	chr15:53351200-53352800	Enhancers	HepG2	liver
32	chr15:53352400-53353200	Enhancers	Liver	Liver
33	chr15:53352400-53353800	Enhancers	Dnd41	blood
34	chr15:53353200-53364200	Weak transcription	Liver	Liver
35	chr15:53353800-53356600	Weak transcription	Dnd41	blood
36	chr15:53356600-53357200	Enhancers	Dnd41	blood
37	chr15:53359600-53361800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:53360600-53361600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:53362200-53363000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:53362600-53363200	Enhancers	NHEK	skin
41	chr15:53362800-53364200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:53363200-53364000	Weak transcription	NHEK	skin
43	chr15:53363200-53365200	Enhancers	Pancreas	Pancrea
44	chr15:53364000-53364400	Enhancers	Gastric	stomach
45	chr15:53364000-53364400	Enhancers	NH-A	brain
46	chr15:53364000-53364400	Enhancers	NHEK	skin
47	chr15:53364000-53364600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:53364000-53364600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr15:53364200-53364600	Enhancers	Liver	Liver
50	chr15:53364400-53364600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links