Variant report

Variant	esv3344269
Chromosome Location	chr16:35231251-35235449
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 694 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:694 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201289666	chr16:35231254-35231255	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs568751582	chr16:35231263-35231264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs202163849	chr16:35231285-35231286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs111491943	chr16:35231322-35231323	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs539257284	chr16:35231336-35231337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs537890243	chr16:35231351-35231352	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs528562323	chr16:35231378-35231379	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs556188338	chr16:35231411-35231412	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs200960007	chr16:35231451-35231452	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574485758	chr16:35231456-35231457	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs202089071	chr16:35231465-35231466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs557383639	chr16:35231476-35231477	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200403956	chr16:35231482-35231483	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs201274788	chr16:35231488-35231489	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs202166898	chr16:35231498-35231499	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2405633	chr16:35231499-35231500	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201664909	chr16:35231503-35231504	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs555166903	chr16:35231505-35231506	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs573323248	chr16:35231507-35231508	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs202157080	chr16:35231515-35231516	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113530415	chr16:35231521-35231522	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112921270	chr16:35231534-35231535	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs565266056	chr16:35231547-35231548	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs532656360	chr16:35231564-35231565	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201080488	chr16:35231573-35231574	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs373961308	chr16:35231590-35231591	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377090419	chr16:35231600-35231601	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs370154759	chr16:35231603-35231604	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs373614689	chr16:35231616-35231617	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs562693052	chr16:35231621-35231622	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368682482	chr16:35231624-35231625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs372139973	chr16:35231626-35231627	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530232381	chr16:35231633-35231634	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548357186	chr16:35231654-35231655	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs533512318	chr16:35231661-35231662	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs555375418	chr16:35231670-35231671	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374357893	chr16:35231675-35231676	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs368318344	chr16:35231680-35231681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs566938506	chr16:35231683-35231684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372231958	chr16:35231693-35231694	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375240064	chr16:35231698-35231699	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs527507860	chr16:35231703-35231704	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs552399376	chr16:35231713-35231714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369343545	chr16:35231716-35231717	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570804133	chr16:35231722-35231723	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371721432	chr16:35231726-35231727	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376464540	chr16:35231734-35231735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs370034378	chr16:35231738-35231739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538098522	chr16:35231750-35231751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549754919	chr16:35231753-35231754	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Disorders of sex development	21048976	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Renal cell carcinoma	18194544	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35224400-35237800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:35224600-35243000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr16:35227400-35242800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr16:35229400-35231600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:35229400-35232000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr16:35229400-35232800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr16:35229400-35234600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:35229400-35234600	Weak transcription	Aorta	Aorta
9	chr16:35229400-35234800	Weak transcription	Colon Smooth Muscle	Colon
10	chr16:35229400-35234800	Weak transcription	Ovary	ovary
11	chr16:35229400-35234800	Weak transcription	Hela-S3	cervix
12	chr16:35231600-35242800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr16:35232000-35232200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
14	chr16:35232000-35232200	ZNF genes & repeats	HepG2	liver
15	chr16:35232800-35233200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr16:35233800-35234800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr16:35234200-35235800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr16:35234600-35235000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
19	chr16:35234600-35235000	ZNF genes & repeats	Brain Hippocampus Middle	brain
20	chr16:35234600-35235000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
21	chr16:35234600-35235200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
22	chr16:35234600-35235200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
23	chr16:35234600-35235200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr16:35234600-35235200	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr16:35234600-35235200	Active TSS	Aorta	Aorta
26	chr16:35234600-35235200	ZNF genes & repeats	Liver	Liver
27	chr16:35234600-35235200	ZNF genes & repeats	Fetal Brain Male	brain
28	chr16:35234800-35235000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
29	chr16:35234800-35235200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
30	chr16:35234800-35235200	ZNF genes & repeats	Brain Anterior Caudate	brain
31	chr16:35234800-35235200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:35234800-35235200	ZNF genes & repeats	Colon Smooth Muscle	Colon
33	chr16:35234800-35235200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr16:35234800-35235200	ZNF genes & repeats	Left Ventricle	heart
35	chr16:35234800-35235200	Bivalent/Poised TSS	Ovary	ovary
36	chr16:35234800-35235200	ZNF genes & repeats	Hela-S3	cervix
37	chr16:35234800-35235400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr16:35235000-35235200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr16:35235200-35237000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr16:35235200-35237000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr16:35235200-35237000	Weak transcription	Left Ventricle	heart
42	chr16:35235200-35239600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr16:35235200-35239600	Weak transcription	Aorta	Aorta
44	chr16:35235200-35239600	Weak transcription	Colon Smooth Muscle	Colon
45	chr16:35235200-35239600	Weak transcription	Ovary	ovary
46	chr16:35235200-35239600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links