Variant report

Variant	esv3345205
Chromosome Location	chr8:113025276-113029374
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:66 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79193007	chr8:113027657-113027658	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs536756930	chr8:113027669-113027670	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs62521981	chr8:113027704-113027705	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs566908019	chr8:113027723-113027724	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs59556155	chr8:113027789-113027790	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs559342408	chr8:113027840-113027841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs10808450	chr8:113027843-113027844	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs544439381	chr8:113027848-113027849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs10955610	chr8:113027918-113027919	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs537394644	chr8:113027930-113027931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs574423104	chr8:113027947-113027948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs539967011	chr8:113027953-113027954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs559701689	chr8:113027995-113027996	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs532019144	chr8:113028044-113028045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs368318519	chr8:113028062-113028063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs113621844	chr8:113028101-113028102	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs533629987	chr8:113028134-113028135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs376026084	chr8:113028140-113028141	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs73331413	chr8:113028149-113028150	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs143596962	chr8:113028171-113028172	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs74308539	chr8:113028296-113028297	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs73331414	chr8:113028350-113028351	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs80070932	chr8:113028376-113028377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs181748639	chr8:113028407-113028408	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs151235442	chr8:113028424-113028425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs186010808	chr8:113028431-113028432	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs569415564	chr8:113028438-113028439	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs538553885	chr8:113028482-113028483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs117813435	chr8:113028545-113028546	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs575009545	chr8:113028547-113028548	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs192072482	chr8:113028581-113028582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs117939198	chr8:113028599-113028600	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs140894069	chr8:113028608-113028609	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs536999749	chr8:113028647-113028648	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs545349579	chr8:113028671-113028672	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs184114355	chr8:113028685-113028686	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs531476637	chr8:113028712-113028713	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs187083809	chr8:113028715-113028716	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs558532447	chr8:113028751-113028752	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs191049938	chr8:113028763-113028764	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs527532684	chr8:113028845-113028846	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs547619356	chr8:113028858-113028859	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs578161922	chr8:113028908-113028909	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs566930171	chr8:113028962-113028963	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs182077715	chr8:113028963-113028964	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs149736144	chr8:113028989-113028990	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs569263660	chr8:113028990-113028991	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs187174227	chr8:113029022-113029023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs555023415	chr8:113029026-113029027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs568547130	chr8:113029027-113029028	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Non-small cell lung cancer	19010865	CNVD
small cell lung cancer	20016488	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21364760	CNVD
Neuroticism	17667963	CNVD
Papillary thyroid cancer	17515504	CNVD
Basal cell lymphoma	17053054	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113027600-113030600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:113028600-113029000	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links