Variant report

Variant	esv3345913
Chromosome Location	chr3:43698997-43729867
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:405)
CpG islands
(count:61)
Chromatin interactive
region (count:44)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:405 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:43728156-43729125	K562	blood:	n/a	n/a
2	ARID3A	chr3:43710350-43710776	K562	blood:	n/a	n/a
3	ARID3A	chr3:43719560-43720241	K562	blood:	n/a	n/a
4	ARID3A	chr3:43712197-43713177	K562	blood:	n/a	n/a
5	ARID3A	chr3:43715453-43715653	K562	blood:	n/a	n/a
6	ARID3A	chr3:43729587-43730154	K562	blood:	n/a	n/a
7	ATF1	chr3:43712176-43713051	K562	blood:	n/a	n/a
8	ATF1	chr3:43719820-43720184	K562	blood:	n/a	n/a
9	ATF1	chr3:43728098-43728929	K562	blood:	n/a	n/a
10	ATF3	chr3:43719823-43720169	K562	blood:	n/a	n/a
11	BACH1	chr3:43728109-43728969	K562	blood:	n/a	n/a
12	BACH1	chr3:43716424-43716452	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr3:43712226-43712975	K562	blood:	n/a	n/a
14	BHLHE40	chr3:43700922-43701337	K562	blood:	n/a	n/a
15	BHLHE40	chr3:43719818-43720190	K562	blood:	n/a	n/a
16	BHLHE40	chr3:43728189-43730189	K562	blood:	n/a	n/a
17	BHLHE40	chr3:43712120-43713027	K562	blood:	n/a	n/a
18	CBX3	chr3:43700749-43701457	K562	blood:	n/a	n/a
19	CBX3	chr3:43712156-43712558	K562	blood:	n/a	n/a
20	CBX3	chr3:43711876-43713056	K562	blood:	n/a	n/a
21	CBX3	chr3:43719599-43721021	K562	blood:	n/a	n/a
22	CBX3	chr3:43727926-43728757	K562	blood:	n/a	n/a
23	CBX3	chr3:43719856-43720659	K562	blood:	n/a	n/a
24	CBX3	chr3:43727463-43729227	K562	blood:	n/a	n/a
25	CBX3	chr3:43700468-43701463	K562	blood:	n/a	n/a
26	CCNT2	chr3:43717533-43717724	K562	blood:	n/a	n/a
27	CCNT2	chr3:43712087-43713045	K562	blood:	n/a	n/a
28	CCNT2	chr3:43719803-43720270	K562	blood:	n/a	n/a
29	CCNT2	chr3:43728396-43728816	K562	blood:	n/a	chr3:43728591-43728611
30	CEBPB	chr3:43719748-43720377	K562	blood:	n/a	n/a
31	CEBPB	chr3:43710442-43710887	K562	blood:	n/a	n/a
32	CEBPB	chr3:43728513-43728674	K562	blood:	n/a	n/a
33	CEBPB	chr3:43719643-43720293	K562	blood:	n/a	n/a
34	CEBPB	chr3:43728089-43728992	K562	blood:	n/a	n/a
35	CEBPB	chr3:43728199-43728938	K562	blood:	n/a	n/a
36	CEBPB	chr3:43712169-43712515	K562	blood:	n/a	n/a
37	CEBPB	chr3:43719932-43720199	K562	blood:	n/a	n/a
38	CEBPD	chr3:43719742-43720291	K562	blood:	n/a	n/a
39	CEBPD	chr3:43728270-43729240	K562	blood:	n/a	n/a
40	CEBPD	chr3:43728208-43728923	K562	blood:	n/a	n/a
41	CEBPD	chr3:43712142-43713117	K562	blood:	n/a	n/a
42	CEBPD	chr3:43712121-43713156	K562	blood:	n/a	n/a
43	CEBPD	chr3:43719701-43720311	K562	blood:	n/a	n/a
44	CHD2	chr3:43728865-43729065	K562	blood:	n/a	n/a
45	CHD2	chr3:43719831-43720185	K562	blood:	n/a	n/a
46	CHD2	chr3:43700805-43701333	K562	blood:	n/a	n/a
47	CREB1	chr3:43719703-43720375	K562	blood:	n/a	n/a
48	CTCF	chr3:43701182-43701406	K562	blood:	n/a	n/a
49	CTCF	chr3:43701160-43701310	HepG2	liver:	n/a	n/a
50	CTCF	chr3:43719226-43719228	GM10248	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:43729809-43729859	IMR90	lung:	fetal
2	chr3:43729809-43729859	HRE	kidney:	n/a
3	chr3:43729809-43729859	SK-N-MC	brain:	n/a
4	chr3:43729809-43729859	U87	brain:	n/a
5	chr3:43729809-43729859	HRCEpiC	kidney:	n/a
6	chr3:43729809-43729859	HPAEpiC	pulmonary alveolar:	n/a
7	chr3:43729809-43729859	GM19239	blood:	n/a
8	chr3:43729809-43729859	SK-N-SH	brain:	n/a
9	chr3:43729809-43729859	BJ	skin:	n/a
10	chr3:43729809-43729859	HMEC	breast:	n/a
11	chr3:43729809-43729859	NHBE	bronchial:	n/a
12	chr3:43729809-43729859	AG04450	lung:	fetal
13	chr3:43729809-43729859	A549	lung:	n/a
14	chr3:43729809-43729859	CMK	blood:	n/a
15	chr3:43729809-43729859	BE2_C	brain:	n/a
16	chr3:43729809-43729859	PFSK-1	brain:	n/a
17	chr3:43729809-43729859	HEEpiC	esophagus:	n/a
18	chr3:43729809-43729859	AG10803	skin:	n/a
19	chr3:43729809-43729859	GM12878	blood:	n/a
20	chr3:43729809-43729859	RPTEC	kidney:	n/a
21	chr3:43729809-43729859	SAEC	small airway:	n/a
22	chr3:43729809-43729859	MCF10A-Er-Src	breast:	n/a
23	chr3:43729809-43729859	NH-A	brain:	n/a
24	chr3:43729809-43729859	SK-N-SH_RA	brain:	n/a
25	chr3:43729809-43729859	GM12891	blood:	n/a
26	chr3:43729809-43729859	SKMC	muscle:	n/a
27	chr3:43729809-43729859	HUVEC	blood vessel:	n/a
28	chr3:43729809-43729859	HCM	heart:	n/a
29	chr3:43729809-43729859	AoSMC	blood vessel:	n/a
30	chr3:43729809-43729859	GM06990	blood:	n/a
31	chr3:43729809-43729859	HNPCEpiC	eye:	n/a
32	chr3:43729809-43729859	HEK293	kidney:	embryo
33	chr3:43729809-43729859	ECC-1	luminal epithelium:	n/a
34	chr3:43729809-43729859	AG04449	skin:	fetal
35	chr3:43729809-43729859	HIPEpiC	eye:	n/a
36	chr3:43729809-43729859	PrEC	prostate:	n/a
37	chr3:43729809-43729859	NT2-D1	testis:	n/a
38	chr3:43729809-43729859	Jurkat	blood:	n/a
39	chr3:43729809-43729859	Hepatocyte	liver:	n/a
40	chr3:43729809-43729859	PANC-1	pancreas:	n/a
41	chr3:43729809-43729859	HCF	heart:	n/a
42	chr3:43729809-43729859	ProgFib	skin:	n/a
43	chr3:43729809-43729859	HRPEpiC	eye:	n/a
44	chr3:43729809-43729859	HepG2	liver:	n/a
45	chr3:43729809-43729859	AG09319	gingival:	n/a
46	chr3:43729809-43729859	HCT-116	colon:	n/a
47	chr3:43729809-43729859	AG09309	skin:	n/a
48	chr3:43729809-43729859	LNCaP	prostate:	n/a
49	chr3:43729809-43729859	Hela-S3	cervix:	n/a
50	chr3:43729809-43729859	H1-hESC	embryonic stem cell:	embryo

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:43713207..43714769-chr3:43727040..43729951,2	K562	blood:
2	chr3:43664290..43667268-chr3:43726700..43729276,2	K562	blood:
3	chr3:43716954..43719427-chr3:43728298..43730262,2	MCF-7	breast:
4	chr3:43716311..43718019-chr3:43727681..43730024,2	K562	blood:
5	chr3:43701134..43702852-chr3:43714279..43716566,2	K562	blood:
6	chr3:43667496..43670306-chr3:43725898..43728392,2	K562	blood:
7	chr3:43716954..43719427-chr3:43728298..43730262,2	MCF-7	breast:
8	chr3:43677251..43683206-chr3:43726914..43734554,14	K562	blood:
9	chr3:43699724..43702634-chr3:43714279..43716424,2	K562	blood:
10	chr3:43660817..43665304-chr3:43729750..43735886,13	K562	blood:
11	chr3:43685158..43687784-chr3:43729150..43731026,2	MCF-7	breast:
12	chr3:43709203..43710804-chr3:43715318..43717348,2	K562	blood:
13	chr3:43700501..43702980-chr3:43710418..43713903,3	K562	blood:
14	chr3:43709203..43710804-chr3:43715318..43717348,2	K562	blood:
15	chr3:43699095..43702381-chr3:43731036..43733718,3	K562	blood:
16	chr3:43712776..43714761-chr3:43748977..43750830,2	K562	blood:
17	chr3:43690757..43693361-chr3:43714635..43716715,3	K562	blood:
18	chr3:43716311..43718019-chr3:43727681..43730024,2	K562	blood:
19	chr3:43714125..43716115-chr3:43717644..43719157,2	K562	blood:
20	chr3:43659494..43665311-chr3:43727005..43736111,18	K562	blood:
21	chr3:43706184..43709082-chr3:43709419..43712416,3	K562	blood:
22	chr3:43710551..43716177-chr3:43730774..43735158,11	K562	blood:
23	chr3:43699724..43702634-chr3:43714279..43716424,2	K562	blood:
24	chr3:43714125..43716115-chr3:43717644..43719157,2	K562	blood:
25	chr3:43714125..43715958-chr3:43717657..43719647,2	K562	blood:
26	chr3:43700501..43702980-chr3:43710418..43713903,3	K562	blood:
27	chr3:43713088..43715824-chr3:43716519..43719193,2	MCF-7	breast:
28	chr3:43712301..43714220-chr3:43714896..43717158,2	K562	blood:
29	chr3:43699443..43701089-chr3:43729093..43731996,2	MCF-7	breast:
30	chr3:43686217..43687748-chr3:43696666..43699422,2	K562	blood:
31	chr3:43708734..43721567-chr3:43726609..43735922,29	K562	blood:
32	chr3:43714125..43715958-chr3:43717657..43719647,2	K562	blood:
33	chr3:43729811..43732596-chr3:43758996..43761442,2	K562	blood:
34	chr3:43690757..43693361-chr3:43714635..43716715,2	K562	blood:
35	chr3:43712301..43714220-chr3:43714896..43717158,2	K562	blood:
36	chr3:43687935..43690022-chr3:43729079..43730587,2	K562	blood:
37	chr3:43668066..43670803-chr3:43728566..43730812,2	K562	blood:
38	chr3:43713088..43715824-chr3:43716519..43719193,2	MCF-7	breast:
39	chr3:43713207..43714769-chr3:43727040..43729951,2	K562	blood:
40	chr3:43716348..43721609-chr3:43731020..43734011,10	K562	blood:
41	chr3:43706184..43709082-chr3:43709419..43712416,3	K562	blood:
42	chr3:43701134..43702852-chr3:43714279..43716566,2	K562	blood:
43	chr3:43689583..43692223-chr3:43727679..43730041,2	K562	blood:
44	chr3:43699957..43702381-chr3:43731117..43733718,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABHD5-1	chr3:43709318-43709720	expReg_chr3_3407_+

No data

Variant related genes	Relation type
ABHD5	TF binding region
ABHD5	CpG island
ENSG00000011198	chromatin interactions
ENSG00000160746	chromatin interactions

Extended variants
information (count: 735 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:735 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35969658	chr3:43699019-43699020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs189403192	chr3:43699054-43699055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs558646068	chr3:43699090-43699091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs139523123	chr3:43699093-43699094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs372963488	chr3:43699097-43699098	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs144181006	chr3:43699133-43699134	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs554797664	chr3:43699148-43699149	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs574539217	chr3:43699152-43699153	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs540391930	chr3:43699180-43699181	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs554113776	chr3:43699226-43699227	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs114264380	chr3:43699228-43699229	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs545846175	chr3:43699238-43699239	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs146589561	chr3:43699246-43699247	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs531477081	chr3:43699255-43699256	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs181724359	chr3:43699294-43699295	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs561777400	chr3:43699295-43699296	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs530241628	chr3:43699410-43699411	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs140076462	chr3:43699421-43699422	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs566846013	chr3:43699428-43699429	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs532644097	chr3:43699446-43699447	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs561994519	chr3:43699460-43699461	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs552574081	chr3:43699466-43699467	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs143831188	chr3:43699472-43699473	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs185983059	chr3:43699526-43699527	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs538380969	chr3:43699575-43699576	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs145804717	chr3:43699690-43699691	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs201788353	chr3:43699701-43699702	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs549959039	chr3:43699702-43699703	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs532940478	chr3:43699703-43699704	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs568523775	chr3:43699705-43699706	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs575288918	chr3:43699800-43699801	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs113507055	chr3:43699876-43699877	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs143830002	chr3:43699882-43699883	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs577247007	chr3:43699912-43699913	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs555639307	chr3:43699947-43699948	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs559281186	chr3:43699948-43699949	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs151103895	chr3:43699992-43699993	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs551420049	chr3:43699993-43699994	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs191004198	chr3:43700015-43700016	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs181465923	chr3:43700016-43700017	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs541769881	chr3:43700020-43700021	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs553304027	chr3:43700021-43700022	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs186431752	chr3:43700022-43700023	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs540452700	chr3:43700023-43700024	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs560297570	chr3:43700024-43700025	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs532706339	chr3:43700030-43700031	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs552590738	chr3:43700031-43700032	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs555972356	chr3:43700128-43700129	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs569485577	chr3:43700129-43700130	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs190779161	chr3:43700146-43700147	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Neuroblastoma	18923191	CNVD
Colorectal cancer	21297112	CNVD
Lynch syndrome	18415027	CNVD
Renal cell carcinoma	18592004	CNVD
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Kartagener syndrome	16639409	CNVD
Biliary cancer	19435499	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Breast cancer	21509527	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	20409316	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43691600-43700800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:43692000-43700200	Weak transcription	K562	blood
3	chr3:43698200-43702200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:43698200-43702200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:43700200-43700400	Enhancers	Colonic Mucosa	Colon
6	chr3:43700200-43700400	Enhancers	K562	blood
7	chr3:43700400-43701400	Flanking Active TSS	K562	blood
8	chr3:43700600-43701200	ZNF genes & repeats	Lung	lung
9	chr3:43700800-43701000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:43700800-43701200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:43700800-43701200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
12	chr3:43700800-43701400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:43700800-43701400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:43700800-43701400	Enhancers	Stomach Mucosa	stomach
15	chr3:43701000-43701200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr3:43701000-43701200	Enhancers	Colonic Mucosa	Colon
17	chr3:43701000-43701400	ZNF genes & repeats	Esophagus	oesophagus
18	chr3:43701200-43701400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:43701200-43703000	Weak transcription	Lung	lung
20	chr3:43701400-43702200	Weak transcription	Esophagus	oesophagus
21	chr3:43701400-43702200	Enhancers	K562	blood
22	chr3:43702200-43702400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:43702200-43702400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:43702200-43702400	Enhancers	Esophagus	oesophagus
25	chr3:43710000-43712000	Enhancers	K562	blood
26	chr3:43710400-43710800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr3:43710400-43711000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:43710600-43711000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:43710600-43711000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr3:43710600-43711000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:43711000-43713600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:43712000-43713600	Flanking Active TSS	K562	blood
33	chr3:43713600-43718000	Enhancers	K562	blood
34	chr3:43715800-43719600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr3:43716000-43716400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:43716400-43716600	Enhancers	Primary B cells from cord blood	blood
37	chr3:43717600-43717800	Enhancers	Primary hematopoietic stem cells	blood
38	chr3:43717800-43718800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr3:43718000-43718800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr3:43718000-43719400	Genic enhancers	K562	blood
41	chr3:43718600-43719200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr3:43719200-43719400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr3:43719200-43720200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:43719400-43720400	Flanking Active TSS	K562	blood
45	chr3:43720400-43720600	Enhancers	K562	blood
46	chr3:43727000-43728000	Enhancers	K562	blood
47	chr3:43727600-43728000	Enhancers	Placenta	Placenta
48	chr3:43727800-43728200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr3:43727800-43731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:43728000-43728800	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links