Variant report

Variant	esv3346040
Chromosome Location	chr8:104025821-104026221
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103874211..103876733-chr8:104025431..104027243,2	MCF-7	breast:
2	chr8:104025781..104028424-chr8:104031631..104033498,3	MCF-7	breast:
3	chr8:104024663..104026547-chr8:104030749..104032308,2	MCF-7	breast:
4	chr8:104020093..104022947-chr8:104025466..104027135,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155097	chromatin interactions
ENSG00000155096	chromatin interactions
ENSG00000253320	chromatin interactions

Extended variants
information (count: 21 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551740751	chr8:104025844-104025845	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs569862659	chr8:104025932-104025933	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs116549961	chr8:104025942-104025943	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs189323350	chr8:104025945-104025946	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs118027146	chr8:104025953-104025954	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs369084803	chr8:104025959-104025960	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs181981002	chr8:104025970-104025971	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs111838444	chr8:104025971-104025972	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs376303990	chr8:104025984-104025985	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs559576448	chr8:104026016-104026017	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs56220195	chr8:104026035-104026036	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs56004705	chr8:104026041-104026042	Weak transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs373876979	chr8:104026044-104026045	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs557262740	chr8:104026085-104026086	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs375271028	chr8:104026097-104026098	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs575418442	chr8:104026133-104026134	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs542829467	chr8:104026144-104026145	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs149217230	chr8:104026165-104026166	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs369144916	chr8:104026193-104026194	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs372567855	chr8:104026215-104026216	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs573262026	chr8:104026218-104026219	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Multiple myeloma	16461302	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Colorectal cancer	16774939	CNVD
Autosomal-dominant progressive external ophthalmoplegia	19664747	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	17260012	CNVD
Sezary syndrome	18413736	CNVD
Urothelial cell carcinoma	18451213	CNVD
Colorectal cancer	21645411	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	20409316	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Breast cancer	21611746	CNVD
Oral squamous cell carcinoma	21853135	CNVD
Bladder cancer	21909424	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104023200-104032000	Weak transcription	K562	blood
2	chr8:104023200-104032800	Weak transcription	Pancreas	Pancrea
3	chr8:104026200-104026600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:104026200-104026600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:104026200-104026800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr8:104026200-104026800	Enhancers	HUES6 Cell Line	embryonic stem cell

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