Variant report

Variant	esv3346074
Chromosome Location	chr15:83422947-83456222
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:155)
CpG islands
(count:183)
Chromatin interactive
region (count:45)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:155 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:83432219-83432921	HepG2	liver:	n/a	n/a
2	BACH1	chr15:83447640-83447840	K562	blood:	n/a	n/a
3	BATF	chr15:83442793-83442965	GM12878	blood:	n/a	n/a
4	BCL3	chr15:83429357-83429682	GM12878	blood:	n/a	n/a
5	BCL3	chr15:83429252-83429656	GM12878	blood:	n/a	n/a
6	BHLHE40	chr15:83437473-83437744	HepG2	liver:	n/a	n/a
7	BHLHE40	chr15:83441252-83441277	K562	blood:	n/a	n/a
8	BHLHE40	chr15:83432620-83432952	HepG2	liver:	n/a	n/a
9	BRCA1	chr15:83427034-83427036	GM12878	blood:	n/a	n/a
10	CBX3	chr15:83435787-83436064	K562	blood:	n/a	n/a
11	CEBPB	chr15:83447367-83447368	HepG2	liver:	n/a	n/a
12	CEBPZ	chr15:83428992-83429033	HepG2	liver:	n/a	n/a
13	CTCF	chr15:83439604-83439735	K562	blood:	n/a	n/a
14	CTCF	chr15:83440080-83440230	GM12864	blood:	n/a	n/a
15	CTCF	chr15:83439580-83439730	GM12878	blood:	n/a	n/a
16	CTCF	chr15:83439600-83439750	GM06990	blood:	n/a	n/a
17	CTCF	chr15:83447740-83447890	GM12867	blood:	n/a	n/a
18	CTCF	chr15:83427980-83428130	A549	lung:	n/a	n/a
19	CTCF	chr15:83441020-83441170	GM12867	blood:	n/a	n/a
20	CTCF	chr15:83439540-83439690	GM12864	blood:	n/a	n/a
21	CTCF	chr15:83439560-83439710	HMEC	breast:	n/a	n/a
22	CTCF	chr15:83440820-83440970	HMEC	breast:	n/a	n/a
23	CTCF	chr15:83438800-83438950	GM12874	blood:	n/a	n/a
24	CUX1	chr15:83452824-83452828	K562	blood:	n/a	n/a
25	EP300	chr15:83432499-83432953	HepG2	liver:	n/a	n/a
26	EP300	chr15:83432569-83432890	HepG2	liver:	n/a	n/a
27	FOS	chr15:83437526-83437759	MCF10A-Er-Src	breast:	n/a	chr15:83437623-83437630
28	FOS	chr15:83432267-83432338	MCF10A-Er-Src	breast:	n/a	chr15:83432282-83432290
29	FOS	chr15:83437479-83437683	MCF10A-Er-Src	breast:	n/a	chr15:83437623-83437630
30	FOS	chr15:83437524-83437683	MCF10A-Er-Src	breast:	n/a	chr15:83437623-83437630
31	FOS	chr15:83437528-83437719	MCF10A-Er-Src	breast:	n/a	chr15:83437623-83437630
32	FOSL2	chr15:83437315-83437907	SK-N-SH	brain:	n/a	chr15:83437623-83437630
33	FOSL2	chr15:83437491-83437756	HepG2	liver:	n/a	chr15:83437623-83437630
34	FOXA1	chr15:83428947-83429451	HepG2	liver:	n/a	n/a
35	FOXA1	chr15:83432455-83432898	HepG2	liver:	n/a	n/a
36	FOXA1	chr15:83432532-83432980	HepG2	liver:	n/a	n/a
37	FOXA1	chr15:83432385-83432993	HepG2	liver:	n/a	n/a
38	FOXA1	chr15:83428922-83429336	HepG2	liver:	n/a	n/a
39	FOXA1	chr15:83429040-83429451	HepG2	liver:	n/a	n/a
40	FOXA1	chr15:83432453-83432980	HepG2	liver:	n/a	n/a
41	FOXA1	chr15:83429019-83429437	HepG2	liver:	n/a	n/a
42	FOXA2	chr15:83429036-83429315	HepG2	liver:	n/a	n/a
43	FOXA2	chr15:83432509-83432869	HepG2	liver:	n/a	n/a
44	HEY1	chr15:83432650-83432889	HepG2	liver:	n/a	n/a
45	HNF4A	chr15:83432506-83432915	HepG2	liver:	n/a	chr15:83432734-83432748 chr15:83432733-83432748 chr15:83432733-83432748 chr15:83432734-83432747 chr15:83432735-83432747
46	HNF4A	chr15:83432567-83432859	HepG2	liver:	n/a	chr15:83432734-83432748 chr15:83432733-83432748 chr15:83432733-83432748 chr15:83432734-83432747 chr15:83432735-83432747
47	HNF4A	chr15:83432571-83432940	HepG2	liver:	n/a	chr15:83432734-83432748 chr15:83432733-83432748 chr15:83432733-83432748 chr15:83432734-83432747 chr15:83432735-83432747
48	HNF4G	chr15:83432524-83432885	HepG2	liver:	n/a	chr15:83432734-83432748 chr15:83432733-83432748 chr15:83432734-83432749 chr15:83432734-83432747 chr15:83432735-83432747
49	JUN	chr15:83436248-83436500	HepG2	liver:	n/a	chr15:83436346-83436359
50	JUND	chr15:83436164-83436529	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:83428054-83428104	CMK	blood:	n/a
2	chr15:83439027-83439077	AG09309	skin:	n/a
3	chr15:83423879-83423929	K562	blood:	n/a
4	chr15:83428054-83428104	NHBE	bronchial:	n/a
5	chr15:83423879-83423929	AG09319	gingival:	n/a
6	chr15:83439027-83439077	Caco-2	colon:	n/a
7	chr15:83423879-83423929	HEK293	kidney:	embryo
8	chr15:83423879-83423929	HRCEpiC	kidney:	n/a
9	chr15:83428054-83428104	MCF-7	breast:	n/a
10	chr15:83428054-83428104	AoSMC	blood vessel:	n/a
11	chr15:83423879-83423929	HL-60	blood:	n/a
12	chr15:83423879-83423929	GM19239	blood:	n/a
13	chr15:83423879-83423929	AoSMC	blood vessel:	n/a
14	chr15:83423879-83423929	PrEC	prostate:	n/a
15	chr15:83423879-83423929	HNPCEpiC	eye:	n/a
16	chr15:83428054-83428104	HEEpiC	esophagus:	n/a
17	chr15:83423879-83423929	NT2-D1	testis:	n/a
18	chr15:83423879-83423929	ProgFib	skin:	n/a
19	chr15:83423879-83423929	HRPEpiC	eye:	n/a
20	chr15:83423879-83423929	NH-A	brain:	n/a
21	chr15:83439027-83439077	HPAEpiC	pulmonary alveolar:	n/a
22	chr15:83439027-83439077	GM12878	blood:	n/a
23	chr15:83423879-83423929	AG10803	skin:	n/a
24	chr15:83428054-83428104	Jurkat	blood:	n/a
25	chr15:83439027-83439077	A549	lung:	n/a
26	chr15:83423879-83423929	AG09309	skin:	n/a
27	chr15:83439027-83439077	BJ	skin:	n/a
28	chr15:83439027-83439077	SK-N-SH_RA	brain:	n/a
29	chr15:83428054-83428104	HPAEpiC	pulmonary alveolar:	n/a
30	chr15:83428054-83428104	ProgFib	skin:	n/a
31	chr15:83428054-83428104	BJ	skin:	n/a
32	chr15:83439027-83439077	Jurkat	blood:	n/a
33	chr15:83439027-83439077	HEEpiC	esophagus:	n/a
34	chr15:83439027-83439077	HMEC	breast:	n/a
35	chr15:83423879-83423929	AG04450	lung:	fetal
36	chr15:83423879-83423929	LNCaP	prostate:	n/a
37	chr15:83423879-83423929	GM12892	blood:	n/a
38	chr15:83428054-83428104	NT2-D1	testis:	n/a
39	chr15:83439027-83439077	HRCEpiC	kidney:	n/a
40	chr15:83428054-83428104	MCF10A-Er-Src	breast:	n/a
41	chr15:83439027-83439077	AG04450	lung:	fetal
42	chr15:83428054-83428104	SK-N-SH_RA	brain:	n/a
43	chr15:83428054-83428104	U87	brain:	n/a
44	chr15:83423879-83423929	NHDF-neo	bronchial:	n/a
45	chr15:83428054-83428104	ECC-1	luminal epithelium:	n/a
46	chr15:83428054-83428104	HRE	kidney:	n/a
47	chr15:83423879-83423929	HepG2	liver:	n/a
48	chr15:83423879-83423929	HIPEpiC	eye:	n/a
49	chr15:83423879-83423929	HEEpiC	esophagus:	n/a
50	chr15:83439027-83439077	SAEC	small airway:	n/a

(count:45 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83438774..83441165-chr15:83453782..83456653,2	K562	blood:
2	chr15:83455431..83457955-chr15:83489452..83491913,2	MCF-7	breast:
3	chr15:83333185..83334935-chr15:83429635..83431830,2	K562	blood:
4	chr15:83417386..83420562-chr15:83455766..83459056,3	K562	blood:
5	chr15:83429645..83432307-chr15:83436873..83440129,3	K562	blood:
6	chr15:83422361..83425357-chr15:83426199..83428085,2	MCF-7	breast:
7	chr15:83315474..83318164-chr15:83437876..83440206,2	K562	blood:
8	chr15:83436562..83439014-chr15:83439080..83440888,2	K562	blood:
9	chr15:83418321..83420816-chr15:83430517..83433004,2	MCF-7	breast:
10	chr15:83425519..83427195-chr15:83427630..83430055,2	MCF-7	breast:
11	chr15:83432102..83434403-chr15:83439416..83441912,2	MCF-7	breast:
12	chr15:83432559..83435214-chr15:83435455..83437217,3	MCF-7	breast:
13	chr15:83438498..83441390-chr15:83475483..83477867,2	K562	blood:
14	chr15:83423255..83426158-chr15:83477607..83479598,3	MCF-7	breast:
15	chr15:83429645..83432307-chr15:83436873..83440129,3	K562	blood:
16	chr15:83418076..83420138-chr15:83451228..83453567,2	K562	blood:
17	chr15:83434522..83436692-chr15:83477124..83479889,3	MCF-7	breast:
18	chr15:83450311..83453811-chr15:83454548..83456889,4	MCF-7	breast:
19	chr15:83422082..83425178-chr15:83425746..83427952,3	MCF-7	breast:
20	chr15:83432559..83435214-chr15:83435455..83437217,3	MCF-7	breast:
21	chr15:83454122..83456783-chr15:83476893..83479185,2	MCF-7	breast:
22	chr15:83432102..83434403-chr15:83439416..83441912,2	MCF-7	breast:
23	chr15:83315100..83318096-chr15:83438505..83441476,2	K562	blood:
24	chr15:83452909..83455951-chr15:83458205..83460706,4	K562	blood:
25	chr15:83419437..83421687-chr15:83435711..83437467,2	K562	blood:
26	chr15:83377728..83380235-chr15:83424270..83425985,2	MCF-7	breast:
27	chr15:83455503..83457802-chr15:83462699..83465751,3	K562	blood:
28	chr15:83417361..83424147-chr15:83476165..83481050,26	MCF-7	breast:
29	chr15:83425519..83427195-chr15:83427630..83430055,2	MCF-7	breast:
30	chr15:83428179..83430469-chr15:83435765..83438520,3	MCF-7	breast:
31	chr15:83436562..83439014-chr15:83439080..83440888,2	K562	blood:
32	chr15:83425158..83429162-chr15:83434771..83437129,3	K562	blood:
33	chr15:83417627..83419593-chr15:83440111..83442179,2	MCF-7	breast:
34	chr15:83434319..83435819-chr15:83438378..83440350,2	K562	blood:
35	chr15:83417813..83422044-chr15:83423321..83428058,7	MCF-7	breast:
36	chr15:83434319..83435819-chr15:83438378..83440350,2	K562	blood:
37	chr15:83349269..83350840-chr15:83431347..83434212,2	MCF-7	breast:
38	chr15:83450311..83453811-chr15:83454548..83456889,4	MCF-7	breast:
39	chr15:83417439..83419471-chr15:83427262..83430015,3	MCF-7	breast:
40	chr15:83428179..83430469-chr15:83435765..83438520,3	MCF-7	breast:
41	chr15:83425158..83429162-chr15:83434771..83437129,3	K562	blood:
42	chr15:83438774..83441165-chr15:83453782..83456653,2	K562	blood:
43	chr15:83417260..83420154-chr15:83431277..83434001,3	MCF-7	breast:
44	chr15:83417706..83421597-chr15:83434237..83437935,4	MCF-7	breast:
45	chr15:83422950..83425938-chr15:83474104..83476004,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSD2-1	chr15:83421663-83422989	NONHSAT047866
2	lnc-WHAMM-2	chr15:83421636-83425960	ENSG00000252690.2

No data

Variant related genes	Relation type
SCARNA15	TF binding region
SCARNA15	CpG island
ENSG00000186628	chromatin interactions
ENSG00000250988	chromatin interactions
ENSG00000156232	chromatin interactions
ENSG00000214575	chromatin interactions
ENSG00000259462	chromatin interactions
ENSG00000252690	chromatin interactions
ENSG00000103723	chromatin interactions

Extended variants
information (count: 1230 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:1230 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201430132	chr15:83422953-83422954	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
2	rs146509754	chr15:83422954-83422955	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs28715657	chr15:83422959-83422960	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs370857900	chr15:83422960-83422961	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs372678800	chr15:83422972-83422973	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs573375222	chr15:83422975-83422976	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs535806148	chr15:83423015-83423016	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs556003115	chr15:83423039-83423040	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs147412198	chr15:83423113-83423114	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs139684272	chr15:83423230-83423231	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs145196328	chr15:83423243-83423244	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs145765724	chr15:83423331-83423332	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
13	rs35388238	chr15:83423337-83423338	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
14	rs540320277	chr15:83423378-83423379	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
15	rs148942308	chr15:83423413-83423414	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
16	rs560132878	chr15:83423459-83423460	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
17	rs142838291	chr15:83423489-83423490	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
18	rs3803383	chr15:83423493-83423494	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs562776842	chr15:83423534-83423535	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
20	rs546985393	chr15:83423566-83423567	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
21	rs530935917	chr15:83423589-83423590	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
22	rs550945727	chr15:83423677-83423678	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
23	rs571277840	chr15:83423684-83423685	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
24	rs151032868	chr15:83423687-83423688	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
25	rs557064695	chr15:83423759-83423760	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
26	rs77798449	chr15:83423805-83423806	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
27	rs536018046	chr15:83423880-83423881	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	CpG island Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
28	rs11631033	chr15:83423885-83423886	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	CpG island Chromatin interactive region lncRNA	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs575493354	chr15:83423924-83423925	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
30	rs537452455	chr15:83423953-83423954	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
31	rs185052614	chr15:83423962-83423963	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
32	rs141459275	chr15:83423974-83423975	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
33	rs539990187	chr15:83423995-83423996	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
34	rs375013524	chr15:83424013-83424014	Strong transcription Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
35	rs79614034	chr15:83424063-83424064	Strong transcription Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
36	rs71412269	chr15:83424093-83424094	Strong transcription Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
37	rs189887883	chr15:83424121-83424122	Strong transcription Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
38	rs201410244	chr15:83424143-83424144	Strong transcription Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
39	rs145175403	chr15:83424258-83424259	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
40	rs71455422	chr15:83424315-83424316	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
41	rs34034203	chr15:83424333-83424334	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
42	rs557653693	chr15:83424343-83424344	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
43	rs138998098	chr15:83424361-83424362	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
44	rs182205240	chr15:83424381-83424382	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
45	rs545311878	chr15:83424463-83424464	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
46	rs536897037	chr15:83424464-83424465	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
47	rs564505986	chr15:83424480-83424481	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
48	rs533338215	chr15:83424538-83424539	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
49	rs546799998	chr15:83424542-83424543	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
50	rs78817626	chr15:83424571-83424572	Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
abnormal development	18461090	CNVD
Intellectual disability	22102821	CNVD
renal disease	17924346	CNVD
Breast cancer	20409316	CNVD
Mental retardation	17847001	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:718 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83420000-83426600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:83420200-83423400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:83420200-83427000	Weak transcription	Gastric	stomach
4	chr15:83420200-83433400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:83420400-83424400	Weak transcription	Fetal Heart	heart
6	chr15:83420400-83427000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:83420400-83427000	Weak transcription	Esophagus	oesophagus
8	chr15:83420400-83436400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:83420600-83423200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:83420600-83423200	Weak transcription	Placenta	Placenta
11	chr15:83420600-83423200	Weak transcription	Left Ventricle	heart
12	chr15:83420600-83423200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:83420600-83423200	Weak transcription	Osteobl	bone
14	chr15:83420600-83423400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:83420600-83423400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:83420600-83423400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:83420600-83423400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:83420600-83423400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:83420600-83423400	Weak transcription	Brain Substantia Nigra	brain
20	chr15:83420600-83423400	Weak transcription	Fetal Kidney	kidney
21	chr15:83420600-83423400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:83420600-83423400	Weak transcription	NH-A	brain
23	chr15:83420600-83423400	Weak transcription	NHDF-Ad	bronchial
24	chr15:83420600-83423800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:83420600-83424000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:83420600-83426400	Weak transcription	Thymus	Thymus
27	chr15:83420600-83429000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr15:83420800-83423200	Weak transcription	HMEC	breast
29	chr15:83420800-83423400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:83420800-83423400	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:83420800-83423400	Weak transcription	Lung	lung
32	chr15:83420800-83423400	Weak transcription	Spleen	Spleen
33	chr15:83420800-83423600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:83420800-83423600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:83420800-83427000	Weak transcription	Aorta	Aorta
36	chr15:83420800-83427000	Weak transcription	Right Ventricle	heart
37	chr15:83420800-83431400	Weak transcription	Stomach Mucosa	stomach
38	chr15:83421000-83424000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:83421000-83428000	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:83421000-83428200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:83421000-83428400	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:83421000-83428400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:83421000-83428600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:83421000-83429400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:83421200-83423400	Weak transcription	Fetal Brain Female	brain
46	chr15:83421200-83423600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:83421200-83423600	Weak transcription	Brain Angular Gyrus	brain
48	chr15:83421200-83424600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
49	chr15:83421200-83425200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr15:83421200-83426000	Strong transcription	K562	blood

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