Variant report
| Variant | esv3346361 |
|---|---|
| Chromosome Location | chr10:16045873-16046429 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs147832205 | chr10:16045900-16045901 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs189678169 | chr10:16046020-16046021 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs561193975 | chr10:16046034-16046035 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs528597831 | chr10:16046047-16046048 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs546970546 | chr10:16046056-16046057 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs571665778 | chr10:16046058-16046059 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs558546378 | chr10:16046114-16046115 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs113485306 | chr10:16046130-16046131 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs569555742 | chr10:16046132-16046133 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs376950186 | chr10:16046139-16046140 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs371366557 | chr10:16046173-16046174 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs562471501 | chr10:16046194-16046195 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs11253730 | chr10:16046244-16046245 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 14 | rs558459273 | chr10:16046259-16046260 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs143506668 | chr10:16046273-16046274 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs147997064 | chr10:16046287-16046288 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs182296532 | chr10:16046292-16046293 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs140712326 | chr10:16046351-16046352 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs552688003 | chr10:16046372-16046373 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs187776663 | chr10:16046405-16046406 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs544630928 | chr10:16046417-16046418 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:46)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 22032731 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Autism | 22495311 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| DiGeorge-Velo cardiofacial | 22470819 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Adrenocortical carcinoma | 18281524 | CNVD |
| Digeorge syndrome | 17576883 | CNVD |
| Lung cancer | 16773561 | CNVD |
| Velocardiofacial syndrome | 17576883 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Breast cancer | 22048815 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:16045200-16046600 | Enhancers | Dnd41 | blood |
