Variant report
| Variant | esv3347413 |
|---|---|
| Chromosome Location | chr10:20092596-20093152 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs551728696 | chr10:20092632-20092633 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs11011559 | chr10:20092641-20092642 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs546330645 | chr10:20092681-20092682 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs536610988 | chr10:20092691-20092692 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs548975259 | chr10:20092731-20092732 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs564521540 | chr10:20092736-20092737 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs144066005 | chr10:20092815-20092816 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs553933246 | chr10:20092871-20092872 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs958397 | chr10:20092883-20092884 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs539722187 | chr10:20092894-20092895 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs562087309 | chr10:20092900-20092901 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs544834303 | chr10:20092918-20092919 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs72782196 | chr10:20092936-20092937 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs144400487 | chr10:20092977-20092978 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs543411060 | chr10:20092992-20092993 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs562159851 | chr10:20093031-20093032 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs551105143 | chr10:20093049-20093050 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs563343613 | chr10:20093050-20093051 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs148392767 | chr10:20093120-20093121 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs34121759 | chr10:20093125-20093126 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:39)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Epilepsy | 22083797 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:20092400-20093400 | Weak transcription | Fetal Intestine Large | intestine |
