Variant report

Variant	esv3347627
Chromosome Location	chr19:27739311-27750165
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:27739276..27740188-chr3:90489068..90489568,2	MCF-7	breast:
2	chr1:121484242..121485223-chr19:27739792..27740312,2	MCF-7	breast:
3	chr19:27738271..27740312-chr4:68262912..68265515,2	MCF-7	breast:
4	chr1:121483051..121485429-chr19:27736244..27740196,9	MCF-7	breast:
5	chr16:69363397..69365027-chr19:27738551..27740871,2	MCF-7	breast:
6	chr1:121482889..121485426-chr19:27733290..27740540,17	K562	blood:
7	chr19:27731229..27733515-chr19:27737682..27740212,3	MCF-7	breast:
8	chr18:60172493..60172994-chr19:27739182..27739818,2	MCF-7	breast:
9	chr10:42528075..42531081-chr19:27735905..27739791,6	MCF-7	breast:
10	chr19:27738500..27739360-chr2:237227769..237228539,2	MCF-7	breast:
11	chr10:42529415..42529944-chr19:27739260..27739782,2	MCF-7	breast:
12	chr16:31225017..31226858-chr19:27739368..27741281,2	MCF-7	breast:
13	chr17:58603504..58604171-chr19:27738843..27739764,2	MCF-7	breast:
14	chr1:121482889..121485426-chr19:27735763..27740540,17	K562	blood:
15	chr19:18498589..18499092-chr19:27739098..27739794,2	HCT-116	colon:
16	chr19:27738271..27739820-chr6:58772163..58774918,2	MCF-7	breast:
17	chr16:5710936..5711647-chr19:27738832..27739454,2	MCF-7	breast:
18	chr13:28193921..28196192-chr19:27738694..27740822,2	MCF-7	breast:
19	chr10:42530145..42531061-chr19:27738673..27739367,3	MCF-7	breast:
20	chr11:117787369..117787889-chr19:27738686..27739368,2	K562	blood:
21	chr1:12392654..12393407-chr19:27738850..27739687,2	MCF-7	breast:
22	chr1:244228644..244231049-chr19:27736676..27739352,2	MCF-7	breast:
23	chr1:121483138..121485425-chr19:27735007..27739872,9	MCF-7	breast:
24	chr10:42530126..42531081-chr19:27738662..27739344,3	MCF-7	breast:
25	chr10:42528436..42531081-chr19:27736662..27739367,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000186184	chromatin interactions
ENSG00000139517	chromatin interactions
ENSG00000259349	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000177238	chromatin interactions
ENSG00000258429	chromatin interactions

Extended variants
information (count: 1700 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:1700 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78379966	chr19:27739311-27739312	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs368176804	chr19:27739312-27739313	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs77967364	chr19:27739317-27739318	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs75488388	chr19:27739318-27739319	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs79224980	chr19:27739319-27739320	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs74502022	chr19:27739321-27739322	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs62137870	chr19:27739323-27739324	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs371645953	chr19:27739324-27739325	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs75918227	chr19:27739325-27739326	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs80039952	chr19:27739327-27739328	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs79667311	chr19:27739328-27739329	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
12	rs62137871	chr19:27739329-27739330	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
13	rs78575114	chr19:27739330-27739331	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs559633701	chr19:27739331-27739332	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs375946002	chr19:27739333-27739334	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs60421326	chr19:27739348-27739349	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs76278660	chr19:27739352-27739353	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs551610633	chr19:27739354-27739355	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs187412061	chr19:27739358-27739359	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs76067682	chr19:27739361-27739362	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs531699723	chr19:27739363-27739364	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs367601195	chr19:27739364-27739365	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs372297259	chr19:27739367-27739368	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs375284998	chr19:27739369-27739370	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs75946853	chr19:27739373-27739374	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs77043065	chr19:27739377-27739378	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs79270166	chr19:27739378-27739379	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs79245559	chr19:27739380-27739381	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs79145433	chr19:27739383-27739384	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs77224990	chr19:27739384-27739385	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs375830575	chr19:27739386-27739387	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs77462067	chr19:27739387-27739388	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs369562998	chr19:27739395-27739396	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs76828828	chr19:27739396-27739397	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs535595566	chr19:27739397-27739398	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs547583949	chr19:27739398-27739399	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs71255094	chr19:27739402-27739403	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs565890716	chr19:27739404-27739405	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs539657403	chr19:27739407-27739408	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs139140700	chr19:27739412-27739413	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
41	rs140529132	chr19:27739413-27739414	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
42	rs74213271	chr19:27739416-27739417	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
43	rs146325036	chr19:27739419-27739420	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
44	rs373252455	chr19:27739420-27739421	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
45	rs8109401	chr19:27739429-27739430	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
46	rs201515838	chr19:27739431-27739432	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
47	rs576686077	chr19:27739435-27739436	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
48	rs77737751	chr19:27739438-27739439	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
49	rs537029478	chr19:27739440-27739441	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
50	rs184409868	chr19:27739443-27739444	ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD

Chromatin state (count:157 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27739600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
2	chr19:27731800-27739600	ZNF genes & repeats	Brain Hippocampus Middle	brain
3	chr19:27731800-27739600	ZNF genes & repeats	Fetal Intestine Large	intestine
4	chr19:27731800-27739600	ZNF genes & repeats	Ovary	ovary
5	chr19:27731800-27739600	ZNF genes & repeats	Spleen	Spleen
6	chr19:27731800-27739800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr19:27731800-27739800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
8	chr19:27731800-27739800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr19:27731800-27739800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:27731800-27739800	ZNF genes & repeats	Fetal Stomach	stomach
11	chr19:27731800-27740000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr19:27731800-27740000	ZNF genes & repeats	Colonic Mucosa	Colon
13	chr19:27731800-27740200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr19:27731800-27740400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr19:27731800-27740400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr19:27731800-27740400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:27731800-27740400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr19:27731800-27740400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
19	chr19:27731800-27740400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
21	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
22	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
23	chr19:27731800-27740400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
24	chr19:27731800-27740400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
25	chr19:27731800-27740400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
26	chr19:27731800-27740400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:27731800-27740400	ZNF genes & repeats	Fetal Heart	heart
28	chr19:27731800-27740400	ZNF genes & repeats	Fetal Lung	lung
29	chr19:27731800-27740400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
30	chr19:27731800-27740400	ZNF genes & repeats	Small Intestine	intestine
31	chr19:27731800-27740400	ZNF genes & repeats	Stomach Mucosa	stomach
32	chr19:27731800-27740600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
33	chr19:27731800-27740600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
34	chr19:27731800-27740600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr19:27731800-27740600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:27731800-27740600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr19:27731800-27740600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:27731800-27740600	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr19:27731800-27740600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
40	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
41	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr19:27731800-27740600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
43	chr19:27731800-27740600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr19:27731800-27740600	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr19:27731800-27740600	ZNF genes & repeats	Liver	Liver
46	chr19:27731800-27740600	ZNF genes & repeats	Brain Angular Gyrus	brain
47	chr19:27731800-27740600	ZNF genes & repeats	Brain Anterior Caudate	brain
48	chr19:27731800-27740600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
49	chr19:27731800-27740600	ZNF genes & repeats	Brain Substantia Nigra	brain
50	chr19:27731800-27740600	ZNF genes & repeats	Colon Smooth Muscle	Colon

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