Variant report

Variant	esv3347671
Chromosome Location	chr13:29786276-29922806
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:365)
CpG islands
(count:427)
Chromatin interactive
region (count:17)
LncRNA
region (count:52)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:365 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr13:29869093-29869336	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr13:29869040-29869359	K562	blood:	n/a	n/a
3	BCL11A	chr13:29875197-29875418	H1-hESC	embryonic stem cell:	n/a	chr13:29875277-29875286
4	CEBPB	chr13:29891975-29892179	HepG2	liver:	n/a	n/a
5	CEBPB	chr13:29853176-29853424	IMR90	lung:	n/a	chr13:29853320-29853331
6	CEBPB	chr13:29825486-29825750	HepG2	liver:	n/a	chr13:29825627-29825638
7	CEBPB	chr13:29853177-29853484	HepG2	liver:	n/a	chr13:29853320-29853331
8	CEBPB	chr13:29853279-29853480	K562	blood:	n/a	chr13:29853320-29853331
9	CEBPB	chr13:29824577-29824694	A549	lung:	n/a	n/a
10	CEBPB	chr13:29840324-29840517	K562	blood:	n/a	n/a
11	CEBPB	chr13:29876299-29876537	HepG2	liver:	n/a	chr13:29876434-29876445
12	CEBPB	chr13:29876276-29876558	H1-hESC	embryonic stem cell:	n/a	chr13:29876434-29876445
13	CEBPB	chr13:29801819-29802072	Hela-S3	cervix:	n/a	chr13:29801920-29801933 chr13:29801920-29801933
14	CEBPB	chr13:29825553-29825702	IMR90	lung:	n/a	chr13:29825627-29825638
15	CHD2	chr13:29875276-29875541	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTBP2	chr13:29875174-29875584	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr13:29789894-29790002	MCF-7	breast:	n/a	n/a
18	CTCF	chr13:29893740-29893890	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr13:29834920-29835070	HEK293	kidney:	n/a	n/a
20	CTCF	chr13:29834900-29835050	MCF-7	breast:	n/a	n/a
21	CTCF	chr13:29789868-29790004	MCF-7	breast:	n/a	n/a
22	CTCF	chr13:29834920-29835070	AG10803	skin:	n/a	n/a
23	CTCF	chr13:29840590-29840626	Pancreas_OC	pancreas:	n/a	n/a
24	CTCF	chr13:29893723-29893832	MCF-7	breast:	n/a	n/a
25	CTCF	chr13:29834940-29835090	RPTEC	kidney:	n/a	n/a
26	CTCF	chr13:29840549-29840694	GM13977	blood:	n/a	n/a
27	CTCF	chr13:29834960-29835110	GM12865	blood:	n/a	n/a
28	CTCF	chr13:29859020-29859170	BJ	skin:	n/a	n/a
29	CTCF	chr13:29858920-29859070	NHEK	skin:	n/a	n/a
30	CTCF	chr13:29859020-29859170	AG04449	skin:	n/a	n/a
31	CTCF	chr13:29834813-29835149	T-47D	breast:	n/a	n/a
32	CTCF	chr13:29858858-29859178	MCF-7	breast:	n/a	n/a
33	CTCF	chr13:29880282-29880338	LNCaP	prostate:	n/a	n/a
34	CTCF	chr13:29834920-29835070	HL-60	blood:	n/a	n/a
35	CTCF	chr13:29834900-29835050	GM12875	blood:	n/a	n/a
36	CTCF	chr13:29840581-29840669	GM13976	blood:	n/a	n/a
37	CTCF	chr13:29789874-29790008	MCF-7	breast:	n/a	n/a
38	CTCF	chr13:29840580-29840730	HCPEpiC	choroid plexus:	n/a	n/a
39	CTCF	chr13:29834970-29835105	Fibrobl	skin:	n/a	n/a
40	CTCF	chr13:29796900-29797050	GM12875	blood:	n/a	n/a
41	CTCF	chr13:29835010-29835076	GM10248	blood:	n/a	n/a
42	CTCF	chr13:29835040-29835190	RPTEC	kidney:	n/a	n/a
43	CTCF	chr13:29840500-29840650	GM12873	blood:	n/a	n/a
44	CTCF	chr13:29893556-29893897	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr13:29858990-29859118	LNCaP	prostate:	n/a	n/a
46	CTCF	chr13:29840572-29840664	MCF-7	breast:	n/a	n/a
47	CTCF	chr13:29893758-29893821	MCF-7	breast:	n/a	n/a
48	CTCF	chr13:29834920-29835070	MCF-7	breast:	n/a	n/a
49	CTCF	chr13:29858860-29859010	HFF	foreskin:	n/a	n/a
50	CTCF	chr13:29834980-29835130	HepG2	liver:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:29910801-29910851	K562	blood:	n/a
2	chr13:29914097-29914147	HRE	kidney:	n/a
3	chr13:29913935-29913985	HEK293	kidney:	embryo
4	chr13:29910801-29910851	SK-N-MC	brain:	n/a
5	chr13:29914200-29914250	GM12878	blood:	n/a
6	chr13:29910801-29910851	LNCaP	prostate:	n/a
7	chr13:29913347-29913397	HRE	kidney:	n/a
8	chr13:29914200-29914250	NH-A	brain:	n/a
9	chr13:29910801-29910851	NT2-D1	testis:	n/a
10	chr13:29913347-29913397	Caco-2	colon:	n/a
11	chr13:29916117-29916167	NHDF-neo	bronchial:	n/a
12	chr13:29913347-29913397	HL-60	blood:	n/a
13	chr13:29910801-29910851	HCPEpiC	choroid plexus:	n/a
14	chr13:29875027-29875077	ECC-1	luminal epithelium:	n/a
15	chr13:29913935-29913985	BJ	skin:	n/a
16	chr13:29910801-29910851	HNPCEpiC	eye:	n/a
17	chr13:29914200-29914250	ProgFib	skin:	n/a
18	chr13:29916117-29916167	LNCaP	prostate:	n/a
19	chr13:29914097-29914147	SAEC	small airway:	n/a
20	chr13:29875027-29875077	GM19239	blood:	n/a
21	chr13:29875027-29875077	SAEC	small airway:	n/a
22	chr13:29913347-29913397	NHDF-neo	bronchial:	n/a
23	chr13:29916117-29916167	ovcar-3	ovarian:	n/a
24	chr13:29916117-29916167	Hepatocyte	liver:	n/a
25	chr13:29910801-29910851	Hepatocyte	liver:	n/a
26	chr13:29875027-29875077	BE2_C	brain:	n/a
27	chr13:29913935-29913985	GM19239	blood:	n/a
28	chr13:29913347-29913397	GM12892	blood:	n/a
29	chr13:29913935-29913985	ProgFib	skin:	n/a
30	chr13:29914200-29914250	HL-60	blood:	n/a
31	chr13:29875027-29875077	A549	lung:	n/a
32	chr13:29913347-29913397	U87	brain:	n/a
33	chr13:29916117-29916167	T-47D	breast:	n/a
34	chr13:29914200-29914250	HAEpiC	amniotic membrane:	n/a
35	chr13:29875027-29875077	HUVEC	blood vessel:	n/a
36	chr13:29914097-29914147	GM19239	blood:	n/a
37	chr13:29913347-29913397	SKMC	muscle:	n/a
38	chr13:29914200-29914250	RPTEC	kidney:	n/a
39	chr13:29916117-29916167	NHBE	bronchial:	n/a
40	chr13:29875027-29875077	HepG2	liver:	n/a
41	chr13:29916117-29916167	Caco-2	colon:	n/a
42	chr13:29913347-29913397	Hepatocyte	liver:	n/a
43	chr13:29910801-29910851	GM06990	blood:	n/a
44	chr13:29914200-29914250	Jurkat	blood:	n/a
45	chr13:29875027-29875077	BJ	skin:	n/a
46	chr13:29916117-29916167	H1-hESC	embryonic stem cell:	embryo
47	chr13:29913935-29913985	AG09319	gingival:	n/a
48	chr13:29913347-29913397	CMK	blood:	n/a
49	chr13:29916117-29916167	HUVEC	blood vessel:	n/a
50	chr13:29913347-29913397	GM12878	blood:	n/a

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:29890625..29892336-chr13:29895861..29897875,2	K562	blood:
2	chr13:29798482..29800939-chr13:29808529..29811047,2	MCF-7	breast:
3	chr13:29754593..29756935-chr13:29798508..29800857,2	K562	blood:
4	chr13:29834619..29835251-chr3:64307275..64308025,2	MCF-7	breast:
5	chr13:29798482..29800939-chr13:29808529..29811047,2	MCF-7	breast:
6	chr13:29858534..29859475-chr13:29937067..29937809,7	MCF-7	breast:
7	chr13:29890625..29892336-chr13:29895861..29897875,2	K562	blood:
8	chr13:29888475..29891043-chr13:29899150..29901551,2	MCF-7	breast:
9	chr13:29785961..29788916-chr13:29921659..29923397,2	MCF-7	breast:
10	chr13:29785961..29788916-chr13:29921659..29923397,2	MCF-7	breast:
11	chr13:29858379..29859549-chr13:29943302..29943872,3	MCF-7	breast:
12	chr13:29654983..29655766-chr13:29834963..29835491,2	MCF-7	breast:
13	chr13:29888475..29891043-chr13:29899150..29901551,2	MCF-7	breast:
14	chr13:29858426..29859109-chr13:29936606..29937542,4	MCF-7	breast:
15	chr13:29379087..29379680-chr13:29834729..29835443,3	MCF-7	breast:
16	chr13:29844261..29845821-chr9:131938747..131941105,2	MCF-7	breast:
17	chr13:29919067..29920679-chr13:29926548..29928258,2	MCF-7	breast:

(count:52 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC7A1-2	chr13:29839738-29839804	NONHSAT032720
2	lnc-SLC7A1-2	chr13:29835298-29835363	NONHSAT032725
3	lnc-SLC7A1-2	chr13:29842609-29842662	NONHSAT032728
4	lnc-SLC7A1-2	chr13:29836206-29836333	NONHSAT032725
5	lnc-SLC7A1-6	chr13:29891656-29892082	NONHSAT032730
6	lnc-SLC7A1-2	chr13:29848964-29849101	NONHSAT032729
7	lnc-SLC7A1-2	chr13:29824552-29824691	ENSG00000236758.1
8	lnc-SLC7A1-2	chr13:29835298-29835363	NONHSAT032720
9	lnc-SLC7A1-2	chr13:29845920-29846036	NONHSAT032719
10	lnc-SLC7A1-2	chr13:29830391-29830513	NONHSAT032725
11	lnc-SLC7A1-2	chr13:29839738-29839854	NONHSAT032719
12	lnc-SLC7A1-2	chr13:29824552-29824691	ENSG00000236758.1
13	lnc-SLC7A1-2	chr13:29813516-29814095	ENSG00000236758.1
14	lnc-SLC7A1-2	chr13:29844422-29844511	NONHSAT032719
15	lnc-SLC7A1-2	chr13:29839738-29839854	ucscGeneNc_uc001usu_1
16	lnc-SLC7A1-2	chr13:29812407-29813605	NONHSAT032719
17	lnc-SLC7A1-2	chr13:29814597-29815023	NONHSAT032724
18	lnc-SLC7A1-2	chr13:29848964-29849282	NONHSAT032726
19	lnc-SLC7A1-2	chr13:29835298-29835363	NONHSAT032719
20	lnc-SLC7A1-2	chr13:29844422-29844511	NONHSAT032727
21	lnc-SLC7A1-2	chr13:29813496-29813733	NONHSAT032720
22	lnc-SLC7A1-2	chr13:29830391-29830513	NONHSAT032726
23	lnc-SLC7A1-2	chr13:29844422-29844511	NONHSAT032726
24	lnc-SLC7A1-2	chr13:29835298-29835363	NONHSAT032724
25	lnc-SLC7A1-2	chr13:29829879-29830026	NONHSAT032725
26	lnc-SLC7A1-2	chr13:29846140-29846230	NONHSAT032729
27	lnc-SLC7A1-2	chr13:29845920-29846036	ucscGeneNc_uc001usu_1
28	lnc-SLC7A1-2	chr13:29813924-29814264	ENSG00000236758.1
29	lnc-SLC7A1-8	chr13:29791886-29792040	NONHSAT032717
30	lnc-SLC7A1-2	chr13:29836206-29836342	NONHSAT032720
31	lnc-SLC7A1-2	chr13:29844422-29844511	NONHSAT032728
32	lnc-SLC7A1-2	chr13:29839738-29839854	NONHSAT032727
33	lnc-SLC7A1-2	chr13:29829879-29830026	NONHSAT032726
34	lnc-SLC7A1-2	chr13:29835298-29835363	ucscGeneNc_uc001usu_1
35	lnc-SLC7A1-2	chr13:29835313-29835363	NONHSAT032727
36	lnc-SLC7A1-2	chr13:29837607-29837898	NONHSAT032724
37	lnc-SLC7A1-2	chr13:29847604-29847913	NONHSAT032726
38	lnc-SLC7A1-2	chr13:29836206-29836342	NONHSAT032724
39	lnc-SLC7A1-6	chr13:29894354-29894374	NONHSAT032730
40	lnc-SLC7A1-2	chr13:29830391-29830513	NONHSAT032724
41	lnc-SLC7A1-2	chr13:29829402-29829529	NONHSAT032725
42	lnc-SLC7A1-2	chr13:29835298-29835363	NONHSAT032726
43	lnc-SLC7A1-2	chr13:29824552-29824691	ENSG00000236758.1
44	lnc-SLC7A1-2	chr13:29813760-29814095	ENSG00000236758.1
45	lnc-SLC7A1-2	chr13:29845920-29846051	NONHSAT032728
46	lnc-SLC7A1-2	chr13:29847604-29847913	NONHSAT032729
47	lnc-SLC7A1-2	chr13:29816666-29816835	ENSG00000236758.1
48	lnc-SLC7A1-2	chr13:29844422-29844511	ucscGeneNc_uc001usu_1
49	lnc-SLC7A1-2	chr13:29816666-29816835	ENSG00000236758.1
50	lnc-SLC7A1-2	chr13:29844959-29845169	NONHSAT032727

No data

Variant related genes	Relation type
ENSG00000270680	TF binding region
GAPDHP69	TF binding region
MTUS2-AS2	TF binding region
ENSG00000221670	TF binding region
ENSG00000270680	CpG island
GAPDHP69	CpG island
MTUS2-AS2	CpG island
ENSG00000221670	CpG island
ENSG00000188483	chromatin interactions
ENSG00000204055	chromatin interactions

Extended variants
information (count: 5046 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:5046 , 50 per page) page: 1 2 3 4 5 6 7 ... 101

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9314940	chr13:29786291-29786292	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs574085268	chr13:29786313-29786314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs576386934	chr13:29786377-29786378	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571660138	chr13:29786426-29786427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs148432103	chr13:29786457-29786458	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs536704557	chr13:29786477-29786478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs9550450	chr13:29786486-29786487	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs201848991	chr13:29786499-29786500	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs200385126	chr13:29786503-29786504	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs146685780	chr13:29786520-29786521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs545223537	chr13:29786542-29786543	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs376086367	chr13:29786613-29786614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs7995580	chr13:29786615-29786616	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs572353598	chr13:29786629-29786630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs540932338	chr13:29786634-29786635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs369189211	chr13:29786643-29786644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs111341440	chr13:29786696-29786697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs377294666	chr13:29786704-29786705	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs142789543	chr13:29786733-29786734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs569859783	chr13:29786754-29786755	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs563422921	chr13:29786762-29786763	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs531793589	chr13:29786783-29786784	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs117575661	chr13:29786807-29786808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs116968196	chr13:29786813-29786814	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs551989789	chr13:29786834-29786835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs571842164	chr13:29786858-29786859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs7997357	chr13:29786888-29786889	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs548117122	chr13:29786915-29786916	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs147408904	chr13:29786927-29786928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs140773236	chr13:29786929-29786930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs74463745	chr13:29786941-29786942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs150863090	chr13:29786965-29786966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs6490370	chr13:29786977-29786978	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs538454235	chr13:29786993-29786994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs558672369	chr13:29786999-29787000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs7339092	chr13:29787017-29787018	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs540895555	chr13:29787024-29787025	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs11619729	chr13:29787033-29787034	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs569678006	chr13:29787046-29787047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs371239121	chr13:29787083-29787084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs7337727	chr13:29787121-29787122	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs183152648	chr13:29787145-29787146	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs532279010	chr13:29787152-29787153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs545582086	chr13:29787154-29787155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs11147371	chr13:29787163-29787164	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs201964197	chr13:29787196-29787197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs199729207	chr13:29787202-29787203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs149368415	chr13:29787207-29787208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs201888196	chr13:29787277-29787278	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs111739660	chr13:29787283-29787284	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Cancer	20164920	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	18698080	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Squamous cell cancer	20885788	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Malignant glioma	17146433	CNVD
Breast cancer	17899364	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Myelofibrosis	22110671	CNVD
Non-small cell lung cancer	21829676	CNVD
Retinoblastoma	22278416	CNVD
Peters Plus syndrome	16909395	CNVD
Trisomy	24170809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Breast cancer	20031965	CNVD
Colorectal cancer	19287155	CNVD
Ovarian cancer	19047089	CNVD
Alveolar rhabdomyosarcoma	16790082	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:246 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29786200-29787600	Enhancers	Dnd41	blood
2	chr13:29794600-29794800	Enhancers	Aorta	Aorta
3	chr13:29794800-29797400	Weak transcription	Aorta	Aorta
4	chr13:29795000-29795600	Enhancers	Fetal Heart	heart
5	chr13:29795600-29797600	Weak transcription	Fetal Heart	heart
6	chr13:29796600-29797000	Enhancers	Fetal Muscle Trunk	muscle
7	chr13:29796600-29798200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:29796600-29798400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:29796800-29798400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:29796800-29798400	ZNF genes & repeats	Dnd41	blood
11	chr13:29797000-29797200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr13:29797000-29797800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr13:29797000-29798400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr13:29797200-29798200	ZNF genes & repeats	Liver	Liver
15	chr13:29797200-29798200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
16	chr13:29797400-29798200	ZNF genes & repeats	Brain Anterior Caudate	brain
17	chr13:29797400-29798400	ZNF genes & repeats	Aorta	Aorta
18	chr13:29797600-29798000	Active TSS	Colon Smooth Muscle	Colon
19	chr13:29797600-29798200	ZNF genes & repeats	Fetal Heart	heart
20	chr13:29797600-29798200	ZNF genes & repeats	Fetal Stomach	stomach
21	chr13:29798000-29798200	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr13:29798000-29799400	Enhancers	Rectal Smooth Muscle	rectum
23	chr13:29798000-29799400	Enhancers	Stomach Smooth Muscle	stomach
24	chr13:29798200-29799000	Enhancers	Colon Smooth Muscle	Colon
25	chr13:29798200-29799000	Weak transcription	Fetal Heart	heart
26	chr13:29798200-29799000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr13:29798200-29801000	Weak transcription	Fetal Stomach	stomach
28	chr13:29798400-29799000	Weak transcription	Aorta	Aorta
29	chr13:29798400-29806800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr13:29799000-29799200	Enhancers	Aorta	Aorta
31	chr13:29799000-29799200	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr13:29799000-29799200	Enhancers	Fetal Heart	heart
33	chr13:29799000-29799400	Enhancers	Fetal Muscle Trunk	muscle
34	chr13:29799200-29799400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr13:29799200-29799400	Genic enhancers	Aorta	Aorta
36	chr13:29799200-29799400	Enhancers	Colon Smooth Muscle	Colon
37	chr13:29799200-29799600	Weak transcription	Fetal Heart	heart
38	chr13:29799400-29800000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr13:29799400-29801000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:29799400-29801400	Weak transcription	Colon Smooth Muscle	Colon
41	chr13:29799400-29801600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr13:29799400-29807400	Weak transcription	Aorta	Aorta
43	chr13:29799600-29800400	Enhancers	Fetal Heart	heart
44	chr13:29800400-29800800	Weak transcription	Fetal Heart	heart
45	chr13:29800800-29803200	Enhancers	Fetal Heart	heart
46	chr13:29801000-29801200	Enhancers	Fetal Muscle Trunk	muscle
47	chr13:29801000-29801800	Enhancers	Fetal Muscle Leg	muscle
48	chr13:29801000-29802400	Enhancers	Fetal Stomach	stomach
49	chr13:29801000-29802600	Enhancers	Rectal Smooth Muscle	rectum
50	chr13:29801200-29801800	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links