Variant report

Variant	esv3348195
Chromosome Location	chr10:26913847-26914088
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7078123	chr10:26913852-26913853	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs80067235	chr10:26913860-26913861	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs76929514	chr10:26913865-26913866	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571442966	chr10:26913873-26913874	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs77163044	chr10:26913878-26913879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs77480889	chr10:26913895-26913896	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs76065761	chr10:26913897-26913898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs74465319	chr10:26913925-26913926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs144197857	chr10:26913933-26913934	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs575487936	chr10:26913939-26913940	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs74702332	chr10:26913941-26913942	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs76468145	chr10:26913944-26913945	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs536869661	chr10:26913952-26913953	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs200522131	chr10:26913955-26913956	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs74937059	chr10:26913958-26913959	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs77995679	chr10:26913969-26913970	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs78786710	chr10:26913977-26913978	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs75821613	chr10:26913982-26913983	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs75300798	chr10:26913983-26913984	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs77127099	chr10:26913984-26913985	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs79386776	chr10:26913989-26913990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs78602201	chr10:26913992-26913993	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs79928832	chr10:26914011-26914012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs72788625	chr10:26914015-26914016	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs76228937	chr10:26914022-26914023	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs76529392	chr10:26914027-26914028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs535881429	chr10:26914029-26914030	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs552901953	chr10:26914034-26914035	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs80077076	chr10:26914061-26914062	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs79361290	chr10:26914062-26914063	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs115282990	chr10:26914087-26914088	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs78022539	chr10:26914088-26914089	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26912000-26926400	Weak transcription	Thymus	Thymus
2	chr10:26912200-26916400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:26912200-26916400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:26912200-26917400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:26912400-26916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:26913200-26917600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:26913600-26915600	Enhancers	Liver	Liver

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