Variant report

Variant	esv3348259
Chromosome Location	chr10:1588702-1591000
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR37-2	chr10:1588902-1589059	NONHSAT010934
2	lnc-WDR37-2	chr10:1588902-1589059	NONHSAT010935
3	lnc-WDR37-2	chr10:1590276-1590370	NONHSAT010934

Extended variants
information (count: 126 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:126 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10794756	chr10:1588730-1588731	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs576883602	chr10:1588742-1588743	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs555422816	chr10:1588764-1588765	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571973105	chr10:1588775-1588776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs545908660	chr10:1588778-1588779	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs573841899	chr10:1588779-1588780	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs78051149	chr10:1588869-1588870	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs7080610	chr10:1588870-1588871	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs543213986	chr10:1588873-1588874	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11250607	chr10:1588878-1588879	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs529173367	chr10:1588901-1588902	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs368645225	chr10:1588908-1588909	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs559584914	chr10:1588935-1588936	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs11250608	chr10:1588977-1588978	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
15	rs370489472	chr10:1588989-1588990	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs113761546	chr10:1588999-1589000	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs375809007	chr10:1589008-1589009	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs186010212	chr10:1589067-1589068	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs550414016	chr10:1589075-1589076	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs61831942	chr10:1589092-1589093	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs192110061	chr10:1589097-1589098	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs540485948	chr10:1589103-1589104	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs183233748	chr10:1589127-1589128	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs375266711	chr10:1589131-1589132	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs111926883	chr10:1589155-1589156	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs566353190	chr10:1589173-1589174	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs71199941	chr10:1589208-1589209	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs2387727	chr10:1589209-1589210	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs577326193	chr10:1589233-1589234	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs61831943	chr10:1589241-1589242	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs7083535	chr10:1589242-1589243	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs2387728	chr10:1589247-1589248	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs559435487	chr10:1589314-1589315	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs573048736	chr10:1589327-1589328	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs548558770	chr10:1589343-1589344	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs187554800	chr10:1589364-1589365	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs533485129	chr10:1589377-1589378	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs550324046	chr10:1589378-1589379	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs563754100	chr10:1589380-1589381	Weak transcription Active TSS Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs112488003	chr10:1589420-1589421	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs549552115	chr10:1589437-1589438	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs566246579	chr10:1589440-1589441	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs535282664	chr10:1589461-1589462	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs551104368	chr10:1589466-1589467	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs111397071	chr10:1589493-1589494	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs112123167	chr10:1589500-1589501	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs2012196	chr10:1589508-1589509	Weak transcription Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs12412937	chr10:1589564-1589565	Weak transcription Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs190543745	chr10:1589584-1589585	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs573398764	chr10:1589604-1589605	Weak transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1585200-1594800	Weak transcription	Right Atrium	heart
2	chr10:1586800-1590000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:1587400-1588800	Weak transcription	Brain Germinal Matrix	brain
4	chr10:1587600-1588800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:1587800-1589000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:1587800-1589200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:1588000-1589800	Active TSS	Brain Substantia Nigra	brain
8	chr10:1588000-1590800	Active TSS	Brain Anterior Caudate	brain
9	chr10:1588000-1591200	Weak transcription	Fetal Brain Male	brain
10	chr10:1588200-1589600	Active TSS	Brain Cingulate Gyrus	brain
11	chr10:1588400-1588800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
12	chr10:1588400-1588800	Enhancers	Fetal Thymus	thymus
13	chr10:1588400-1589200	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr10:1588400-1590800	Genic enhancers	Dnd41	blood
15	chr10:1588600-1589200	Enhancers	Spleen	Spleen
16	chr10:1588800-1589200	Active TSS	Brain Angular Gyrus	brain
17	chr10:1588800-1589400	Active TSS	Brain Hippocampus Middle	brain
18	chr10:1588800-1589600	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr10:1588800-1592000	Weak transcription	Fetal Thymus	thymus
20	chr10:1589000-1589200	Enhancers	Brain Germinal Matrix	brain
21	chr10:1589000-1589400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:1589200-1593800	Weak transcription	Brain Germinal Matrix	brain
23	chr10:1589800-1594200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:1590000-1591000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:1590400-1591200	ZNF genes & repeats	GM12878-XiMat	blood
26	chr10:1590600-1591200	Enhancers	Primary B cells from peripheral blood	blood
27	chr10:1590800-1592600	Enhancers	Dnd41	blood

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