Variant report

Variant	esv3348835
Chromosome Location	chr10:42387048-42396076
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:42387191..42387693-chr16:34189725..34190226,2	MCF-7	breast:
2	chr10:42385424..42387506-chr16:88876940..88878642,2	MCF-7	breast:
3	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:
4	chr10:42387171..42387692-chr16:33888891..33889406,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847
2	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
3	lnc-BMS1-12	chr10:42387203-42387475	NONHSAT012847

No data

Variant related genes	Relation type
ENSG00000198931	chromatin interactions

Extended variants
information (count: 2936 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:2936 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543289147	chr10:42387048-42387049	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs562990546	chr10:42387051-42387052	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs576441088	chr10:42387053-42387054	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs28814275	chr10:42387056-42387057	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs4349469	chr10:42387057-42387058	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs545347546	chr10:42387060-42387061	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs9703837	chr10:42387062-42387063	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs12146159	chr10:42387064-42387065	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs28835985	chr10:42387067-42387068	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs3998576	chr10:42387079-42387080	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs11814591	chr10:42387081-42387082	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs139490468	chr10:42387088-42387089	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs35207220	chr10:42387089-42387090	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs149409750	chr10:42387093-42387094	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs528141429	chr10:42387094-42387095	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs548006978	chr10:42387098-42387099	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs147500437	chr10:42387099-42387100	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs140063946	chr10:42387100-42387101	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs561305690	chr10:42387102-42387103	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs145689657	chr10:42387105-42387106	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs147744028	chr10:42387108-42387109	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs201487126	chr10:42387109-42387110	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs4575862	chr10:42387122-42387123	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs530466467	chr10:42387125-42387126	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs74202987	chr10:42387129-42387130	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs4443134	chr10:42387133-42387134	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs4021034	chr10:42387136-42387137	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs142252470	chr10:42387138-42387139	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs151275761	chr10:42387139-42387140	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs140484989	chr10:42387140-42387141	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs144793896	chr10:42387141-42387142	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs550488509	chr10:42387142-42387143	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs146736551	chr10:42387143-42387144	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs140330031	chr10:42387145-42387146	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs145979719	chr10:42387146-42387147	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs138087663	chr10:42387147-42387148	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs2945518	chr10:42387150-42387151	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs143011986	chr10:42387152-42387153	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs148224333	chr10:42387157-42387158	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs141221049	chr10:42387162-42387163	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs147372173	chr10:42387163-42387164	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs138508043	chr10:42387164-42387165	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs143981152	chr10:42387165-42387166	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs147328896	chr10:42387168-42387169	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs139940500	chr10:42387169-42387170	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs149778432	chr10:42387170-42387171	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs144661410	chr10:42387171-42387172	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs148504703	chr10:42387172-42387173	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs144327119	chr10:42387175-42387176	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs146576466	chr10:42387176-42387177	ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:201 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42387800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
2	chr10:42373600-42388200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr10:42373600-42388200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr10:42373600-42388200	ZNF genes & repeats	Placenta	Placenta
5	chr10:42373600-42388200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
6	chr10:42373600-42388400	ZNF genes & repeats	Spleen	Spleen
7	chr10:42373600-42388600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
8	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
9	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
10	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
11	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
12	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
13	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
15	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
22	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
23	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
27	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
30	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
32	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
33	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
35	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
37	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
38	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
39	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
41	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
42	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
43	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
44	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
45	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
46	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
47	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
48	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
49	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
50	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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