Variant report

Variant	esv3349513
Chromosome Location	chr6:66269231-66271379
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:83 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532765633	chr6:66269231-66269232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs577798935	chr6:66269232-66269233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551672168	chr6:66269299-66269300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs569921540	chr6:66269302-66269303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554309611	chr6:66269309-66269310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs574053001	chr6:66269310-66269311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543058143	chr6:66269326-66269327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs562904224	chr6:66269343-66269344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187771787	chr6:66269372-66269373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs545418385	chr6:66269386-66269387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs1331205	chr6:66269399-66269400	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs527884890	chr6:66269405-66269406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs546261754	chr6:66269413-66269414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559833114	chr6:66269445-66269446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs567457296	chr6:66269452-66269453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528992019	chr6:66269535-66269536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs191390935	chr6:66269569-66269570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183046472	chr6:66269570-66269571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538132293	chr6:66269657-66269658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551394405	chr6:66269659-66269660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571372503	chr6:66269688-66269689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs535151485	chr6:66269719-66269720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs114014479	chr6:66269723-66269724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs9345651	chr6:66269731-66269732	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs574166487	chr6:66269744-66269745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536771354	chr6:66269759-66269760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs376380147	chr6:66269814-66269815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs576368815	chr6:66269818-66269819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs147048236	chr6:66269820-66269821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs138297857	chr6:66269877-66269878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs4710526	chr6:66269890-66269891	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs541213760	chr6:66269912-66269913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561176296	chr6:66269922-66269923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs1473780	chr6:66269964-66269965	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs546109117	chr6:66269973-66269974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs367717036	chr6:66269980-66269981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542352632	chr6:66270047-66270048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200721815	chr6:66270076-66270077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs371703389	chr6:66270102-66270103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7773855	chr6:66270103-66270104	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs377658305	chr6:66270113-66270114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs67005825	chr6:66270114-66270115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs61322623	chr6:66270118-66270119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs4710527	chr6:66270119-66270120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543199188	chr6:66270122-66270123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7750155	chr6:66270141-66270142	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs113592050	chr6:66270153-66270154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs188546719	chr6:66270170-66270171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs552429499	chr6:66270173-66270174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201735128	chr6:66270188-66270189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Retinitis pigmentosa	21519034	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:66268400-66277600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links