Variant report

Variant	esv3349653
Chromosome Location	chr19:27733874-27750165
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:56)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:56 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:42527520..42529802-chr19:27732626..27735592,2	K562	blood:
2	chr10:42528436..42531081-chr19:27736662..27739367,4	MCF-7	breast:
3	chr16:5710936..5711647-chr19:27738832..27739454,2	MCF-7	breast:
4	chr12:34844445..34846343-chr19:27735903..27737749,2	K562	blood:
5	chr1:121484705..121485205-chr19:27733910..27734629,2	MCF-7	breast:
6	chr10:42528106..42531063-chr19:27736683..27739174,2	K562	blood:
7	chr10:42529082..42529941-chr19:27738664..27739193,3	MCF-7	breast:
8	chr18:60172493..60172994-chr19:27739182..27739818,2	MCF-7	breast:
9	chr19:27732624..27734230-chr6:74223460..74226002,2	K562	blood:
10	chr1:244228644..244231049-chr19:27736676..27739352,2	MCF-7	breast:
11	chr10:42532112..42532613-chr19:27734969..27735848,2	MCF-7	breast:
12	chr19:27734776..27735283-chr4:142678250..142679232,2	MCF-7	breast:
13	chr1:121483138..121485425-chr19:27735007..27739872,9	MCF-7	breast:
14	chr19:18390431..18393009-chr19:27731584..27734229,2	MCF-7	breast:
15	chr19:27733264..27735341-chr5:49544077..49545577,2	MCF-7	breast:
16	chr19:27732780..27734287-chr3:119350472..119351972,2	MCF-7	breast:
17	chr17:58603504..58604171-chr19:27738843..27739764,2	MCF-7	breast:
18	chr10:42528075..42531081-chr19:27735905..27739791,6	MCF-7	breast:
19	chr19:27738249..27739165-chr3:64009126..64009721,2	MCF-7	breast:
20	chr10:42529442..42530392-chr19:27737662..27738480,2	MCF-7	breast:
21	chr17:57931756..57934704-chr19:27735828..27738481,2	MCF-7	breast:
22	chr10:42530126..42531081-chr19:27738662..27739344,3	MCF-7	breast:
23	chr19:27735077..27736730-chr6:26122693..26124685,2	MCF-7	breast:
24	chr10:42529415..42529944-chr19:27739260..27739782,2	MCF-7	breast:
25	chr13:28193921..28196192-chr19:27738694..27740822,2	MCF-7	breast:
26	chr1:121483185..121485419-chr19:27730521..27734410,16	K562	blood:
27	chr19:27731712..27733212-chr19:27736249..27738480,2	MCF-7	breast:
28	chr1:121482889..121485426-chr19:27733290..27740540,17	K562	blood:
29	chr10:42529302..42529920-chr19:27734982..27735519,2	MCF-7	breast:
30	chr17:56707857..56709514-chr19:27731768..27734278,2	MCF-7	breast:
31	chr11:117787369..117787889-chr19:27738686..27739368,2	K562	blood:
32	chr1:121484518..121485402-chr19:27734128..27734629,2	K562	blood:
33	chr1:121484242..121485223-chr19:27739792..27740312,2	MCF-7	breast:
34	chr1:149223688..149224417-chr19:27738499..27739289,2	MCF-7	breast:
35	chr19:27739276..27740188-chr3:90489068..90489568,2	MCF-7	breast:
36	chr17:57921146..57922788-chr19:27733727..27736557,3	MCF-7	breast:
37	chr19:27735092..27735592-chr4:68265165..68265924,2	MCF-7	breast:
38	chr1:121482889..121485426-chr19:27735763..27740540,17	K562	blood:
39	chr1:121483051..121485429-chr19:27736244..27740196,9	MCF-7	breast:
40	chr16:69363397..69365027-chr19:27738551..27740871,2	MCF-7	breast:
41	chr19:27736247..27738846-chr8:34200775..34202275,2	MCF-7	breast:
42	chr10:42530145..42531061-chr19:27738673..27739367,3	MCF-7	breast:
43	chr19:27738271..27739820-chr6:58772163..58774918,2	MCF-7	breast:
44	chr19:27738249..27739002-chr7:18865984..18866492,2	MCF-7	breast:
45	chr19:27730503..27733214-chr19:27735926..27737745,2	K562	blood:
46	chr1:121483890..121484451-chr19:27736926..27737426,2	MCF-7	breast:
47	chr1:12392654..12393407-chr19:27738850..27739687,2	MCF-7	breast:
48	chr19:27738500..27739360-chr2:237227769..237228539,2	MCF-7	breast:
49	chr19:27731229..27733515-chr19:27737682..27740212,3	MCF-7	breast:
50	chr1:121484295..121485024-chr19:27738000..27738548,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177238	chromatin interactions
ENSG00000258429	chromatin interactions
ENSG00000062725	chromatin interactions
ENSG00000180596	chromatin interactions
ENSG00000180573	chromatin interactions
ENSG00000130522	chromatin interactions
ENSG00000038382	chromatin interactions
ENSG00000186184	chromatin interactions
ENSG00000139517	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000163636	chromatin interactions
ENSG00000267959	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000259349	chromatin interactions

Extended variants
information (count: 3430 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:3430 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371190877	chr19:27733888-27733889	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs202145634	chr19:27733890-27733891	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs4389260	chr19:27733893-27733894	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs578140486	chr19:27733902-27733903	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs545679552	chr19:27733909-27733910	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs563781992	chr19:27733911-27733912	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs12151105	chr19:27733912-27733913	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs9710583	chr19:27733918-27733919	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs180957164	chr19:27733919-27733920	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs74192998	chr19:27733924-27733925	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs61175589	chr19:27733925-27733926	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs542223312	chr19:27733926-27733927	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs560887301	chr19:27733929-27733930	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs12327710	chr19:27733932-27733933	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs77107420	chr19:27733937-27733938	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs11880479	chr19:27733940-27733941	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs57998962	chr19:27733942-27733943	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs74201655	chr19:27733944-27733945	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs74198543	chr19:27733946-27733947	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs79219328	chr19:27733947-27733948	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs59815385	chr19:27733948-27733949	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs74925598	chr19:27733949-27733950	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs200002547	chr19:27733952-27733953	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs59006737	chr19:27733954-27733955	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs550763751	chr19:27733960-27733961	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs569026004	chr19:27733962-27733963	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs536573269	chr19:27733965-27733966	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs9629814	chr19:27733969-27733970	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs548944405	chr19:27733970-27733971	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs74207904	chr19:27733971-27733972	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs534786303	chr19:27733972-27733973	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs80220073	chr19:27733973-27733974	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs56802901	chr19:27733975-27733976	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs57351827	chr19:27733982-27733983	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs36171184	chr19:27733983-27733984	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs75966090	chr19:27733985-27733986	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs76640700	chr19:27733987-27733988	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs553098791	chr19:27733988-27733989	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs201140890	chr19:27733994-27733995	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs77205943	chr19:27733995-27733996	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs74203362	chr19:27733996-27733997	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs578050816	chr19:27733998-27733999	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs9710212	chr19:27734000-27734001	ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs557545078	chr19:27734001-27734002	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs79563716	chr19:27734004-27734005	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs543369054	chr19:27734005-27734006	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs200564741	chr19:27734006-27734007	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs4787573	chr19:27734009-27734010	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs57661117	chr19:27734010-27734011	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs57355216	chr19:27734011-27734012	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD

Chromatin state (count:270 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27734600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:27731800-27734600	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr19:27731800-27734600	ZNF genes & repeats	Placenta	Placenta
4	chr19:27731800-27734800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:27731800-27734800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr19:27731800-27734800	ZNF genes & repeats	Esophagus	oesophagus
7	chr19:27731800-27734800	ZNF genes & repeats	Pancreas	Pancrea
8	chr19:27731800-27734800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
9	chr19:27731800-27734800	ZNF genes & repeats	GM12878-XiMat	blood
10	chr19:27731800-27735000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr19:27731800-27735000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr19:27731800-27735000	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:27731800-27735400	ZNF genes & repeats	Fetal Thymus	thymus
14	chr19:27731800-27736200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:27731800-27737000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
16	chr19:27731800-27737000	ZNF genes & repeats	Osteobl	bone
17	chr19:27731800-27738600	ZNF genes & repeats	Thymus	Thymus
18	chr19:27731800-27739000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr19:27731800-27739600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr19:27731800-27739600	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr19:27731800-27739600	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr19:27731800-27739600	ZNF genes & repeats	Ovary	ovary
23	chr19:27731800-27739600	ZNF genes & repeats	Spleen	Spleen
24	chr19:27731800-27739800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:27731800-27739800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
26	chr19:27731800-27739800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
27	chr19:27731800-27739800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:27731800-27739800	ZNF genes & repeats	Fetal Stomach	stomach
29	chr19:27731800-27740000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
30	chr19:27731800-27740000	ZNF genes & repeats	Colonic Mucosa	Colon
31	chr19:27731800-27740200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr19:27731800-27740400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr19:27731800-27740400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr19:27731800-27740400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:27731800-27740400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:27731800-27740400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
37	chr19:27731800-27740400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
39	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
40	chr19:27731800-27740400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
41	chr19:27731800-27740400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
42	chr19:27731800-27740400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
43	chr19:27731800-27740400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr19:27731800-27740400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr19:27731800-27740400	ZNF genes & repeats	Fetal Heart	heart
46	chr19:27731800-27740400	ZNF genes & repeats	Fetal Lung	lung
47	chr19:27731800-27740400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
48	chr19:27731800-27740400	ZNF genes & repeats	Small Intestine	intestine
49	chr19:27731800-27740400	ZNF genes & repeats	Stomach Mucosa	stomach
50	chr19:27731800-27740600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links